Jatropha Genome Database

JcCA0304841.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0304841.10 + phase: 0 
         (1224 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237680311|gb|GO246523.1|GO246523 JcrME_RL0067 Expressed seque...  1005   0.0  

>gi|237680311|gb|GO246523.1|GO246523 JcrME_RL0067 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 738

 Score = 1005 bits (507), Expect = 0.0
 Identities = 535/539 (99%), Gaps = 4/539 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtggggatatgggggaaggtactattgggggagaaaagaaaggaaaagagaaggaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  atgtggggatatgggggaaggtactattgggggagaaaagaaaggaaaagagaaggaata 141

                                                                       
Query: 61  gcagtgctgtttgcttggatgtcgagcgaagagaggcacttgaagaactatgtagagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 gcagtgctgtttgcttggatgtcgagcgaagagaggcacttgaagaactatgtagagctc 201

                                                                       
Query: 121 tactcgtctctgggatggaattcacttgtttgtcactctcaattcctcaatatgtttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tactcgtctctgggatggaattcacttgtttgtcactctcaattcctcaatatgtttttc 261

                                                                       
Query: 181 ccagacaaagctgaagctttagcatttgatattctcaacagaattgttgaggaactaaag 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 c-agacaaagctgaagctttagcatttgatattctcaacagaattgttgaggaactaaag 320

                                                                       
Query: 241 acgaggccttgccctctggtcttcatgtctttttctggaggtccaaaagcctgtatgtac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgaggccttgccctctggtcttcatgtctttttctggaggtccaaaagcctgtatgtac 380

                                                                       
Query: 301 aaggttcttcagatcattgaggggaagtgtaaattacaactgaatttggatgatcgccga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggttcttcagatcattgaggggaagtgtaaattacaactgaatttggatgatcgccga 440

                                                                       
Query: 361 ctggttagggactgtatttcgggccatatctatgattctagtcctgtggattttacaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggttagggactgtatttcgggccatatctatgattctagtcctgtggattttacaagt 500

                                                                       
Query: 421 gttctggggagagagtttattgttcacccatctgttcttaaaatgtctcgtccaccaaaa 480
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 501 gttctggggagagagtttattgttcacccatctgttctt-aaatgtctcgtccacc-aaa 558

                                                                      
Query: 481 gtcctatcatggatggtaaacagcatttctgattgtcttgatgctctcttcctcaacaa 539
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 559 gtcctatcatggatggtaaacagcatttctgattgtc-tgatgctctcttcctcaacaa 616