Jatropha Genome Database

JcCA0304601.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0304601.20 + phase: 0 /partial
         (582 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517382|gb|FM887324.1|FM887324 FM887324 Jatropha curcas emb...   155   7e-38

>gi|268517382|gb|FM887324.1|FM887324 FM887324 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000502,
           mRNA sequence
          Length = 565

 Score =  155 bits (78), Expect = 7e-38
 Identities = 149/170 (87%), Gaps = 2/170 (1%)
 Strand = Plus / Minus

                                                                       
Query: 415 ggtatgtctgggttaacagcttatgctggtttttatgaggttggtgctcctaagaaagga 474
           |||||| ||||  |||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 544 ggtatgcctggcctaactgcttatgctggtttttatgagattggtgctcctaagaaagga 485

                                                                       
Query: 475 gattatgtgttcgtttcagcagcttctggtgcagttggtcagcttgttggccaattcgca 534
           || |||||||| ||||||||||||||||||||||| ||||  |||||||| || || || 
Sbjct: 484 gagtatgtgtttgtttcagcagcttctggtgcagtcggtctacttgttggtcagtttgcc 425

                                                             
Query: 535 aagttgtcaggttgttatgtgg-tggaagtgc-ggaagcaaagaaaaagt 582
           ||| || | ||||| ||||||| ||||||||| ||||| |||||||||||
Sbjct: 424 aagctgactggttgctatgtggttggaagtgctggaagtaaagaaaaagt 375