Jatropha Genome Database

JcCA0304111.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0304111.10 - phase: 0 
         (972 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523114|gb|FM894697.1|FM894697 FM894697 Jatropha curcas emb...   613   e-175

>gi|268523114|gb|FM894697.1|FM894697 FM894697 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000530,
           mRNA sequence
          Length = 418

 Score =  613 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Plus

                                                                       
Query: 274 gcaacagcactcatatactttaaaaggttttatcttcaatggtcggtcatggagcatgat 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gcaacagcactcatatactttaaaaggttttatcttcaatggtcggtcatggagcatgat 169

                                                                       
Query: 334 ccaaaaaatataatgttaacctgtatatattcagcttgcaagatagaggaaaatcatgtg 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ccaaaaaatataatgttaacctgtatatattcagcttgcaagatagaggaaaatcatgtg 229

                                                                       
Query: 394 tcggcagaggagcttggtaaggggatttcacaggatcatcatatgattctcaattatgag 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tcggcagaggagcttggtaaggggatttcacaggatcatcatatgattctcaattatgag 289

                                                                       
Query: 454 atgataattcttcagagcttggaatttgatcttattgtctatgcaccataccgttcagtt 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atgataattcttcagagcttggaatttgatcttattgtctatgcaccataccgttcagtt 349

                                                                       
Query: 514 gagggttttatcaatgacatggaggaattctgccatgcgacagatgaccaaattcaaatg 573
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gagggttttatcaatgacatggaggaattctgccatgcgacagatgaccaaattcaaatg 409

                    
Query: 574 ctgaaggag 582
           |||||||||
Sbjct: 410 ctgaaggag 418



 Score =  133 bits (67), Expect = 4e-31
 Identities = 74/75 (98%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                       
Query: 200 attctcgtccaaaaccgcttagtgttgaagaagaacaatttatgcgggtgtactatgaat 259
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1   attctcgtccaaaaccgcttagtgttgaagaagaacaa-ttatgcgggtgtactatgaat 59

                          
Query: 260 ataagcttcgagaag 274
           |||||||||||||||
Sbjct: 60  ataagcttcgagaag 74