Jatropha Genome Database
- JcCA0302331.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0302331.10 + phase: 2 /partial
(1069 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|262091048|gb|GT228475.1|GT228475 JC040 Jatropha seeds from fr... 696 0.0
gi|268524445|gb|FM895125.1|FM895125 FM895125 Jatropha curcas emb... 676 0.0
gi|268521297|gb|FM892016.1|FM892016 FM892016 Jatropha curcas emb... 196 4e-50
gi|262091113|gb|GT228540.1|GT228540 JC105 Jatropha seeds from fr... 182 5e-46
>gi|262091048|gb|GT228475.1|GT228475 JC040 Jatropha seeds from fruits
at three stages of maturation Jatropha curcas cDNA clone
Contig40 5', mRNA sequence
Length = 616
Score = 696 bits (351), Expect = 0.0
Identities = 354/355 (99%)
Strand = Plus / Minus
Query: 715 aattcagggtgactggaatggagcaggtgcacatacaaattacagtacaaagtcaatgag 774
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 616 aattcagggtgactggaatggagcaggtgcacatacaatttacagtacaaagtcaatgag 557
Query: 775 aaatgatggaggctatgaggtcatcaagaaagcaattgaaaagctggggttgaggcacaa 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaatgatggaggctatgaggtcatcaagaaagcaattgaaaagctggggttgaggcacaa 497
Query: 835 aaaacacattgctgcatatggtgaaggcaatgagcgccgactcacggggcgacatgaaac 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaaacacattgctgcatatggtgaaggcaatgagcgccgactcacggggcgacatgaaac 437
Query: 895 agctgacatcaacactttcaaatggggtgttgcagaccgtggagcatctgttcgcgttgg 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agctgacatcaacactttcaaatggggtgttgcagaccgtggagcatctgttcgcgttgg 377
Query: 955 ccgggatacagaaaaggaaggaaaagggtattttgaggacagaaggcctgcatcaaacat 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ccgggatacagaaaaggaaggaaaagggtattttgaggacagaaggcctgcatcaaacat 317
Query: 1015 ggatccatatgttgttacttccatgattgcagaaaccaccatcctgtggaaacca 1069
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggatccatatgttgttacttccatgattgcagaaaccaccatcctgtggaaacca 262
>gi|268524445|gb|FM895125.1|FM895125 FM895125 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001902,
mRNA sequence
Length = 341
Score = 676 bits (341), Expect = 0.0
Identities = 341/341 (100%)
Strand = Plus / Plus
Query: 54 agatcatcgcggagtacatatggatcggtggatctggcatggacttgaggagcaaagcaa 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatcatcgcggagtacatatggatcggtggatctggcatggacttgaggagcaaagcaa 60
Query: 114 ggaccctctctggaccagtcagtgatccttcaaagcttccaaagtggaactacgatggtt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggaccctctctggaccagtcagtgatccttcaaagcttccaaagtggaactacgatggtt 120
Query: 174 ccagcacaggccaggctcctggagaagatagtgaagtgatcctctatcctcaagctattt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccagcacaggccaggctcctggagaagatagtgaagtgatcctctatcctcaagctattt 180
Query: 234 ttagggatccatttagaaggggcaacaacatccttgtcatttgtgatgcttacaccccag 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttagggatccatttagaaggggcaacaacatccttgtcatttgtgatgcttacaccccag 240
Query: 294 ccggtgagccaattccaacaaacaagagacatgccgccgctaagattttcagccatcctg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccggtgagccaattccaacaaacaagagacatgccgccgctaagattttcagccatcctg 300
Query: 354 atgtggttgctgaagtgccttggtatggcattgagcaagaa 394
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgtggttgctgaagtgccttggtatggcattgagcaagaa 341
>gi|268521297|gb|FM892016.1|FM892016 FM892016 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002470,
mRNA sequence
Length = 101
Score = 196 bits (99), Expect = 4e-50
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 21 tcatcaaccttaatctctctgagaccactgacaagatcatcgcggagtacatatggatcg 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tcatcaaccttaatctctctgagaccactgacaagatcatcgcggagtacatatggatcg 62
Query: 81 gtggatctggcatggacttgaggagcaaagcaaggaccc 119
|||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gtggatctggcatggacttgaggagcaaagcaaggaccc 101
>gi|262091113|gb|GT228540.1|GT228540 JC105 Jatropha seeds from fruits
at three stages of maturation Jatropha curcas cDNA clone
Contig107 5', mRNA sequence
Length = 753
Score = 182 bits (92), Expect = 5e-46
Identities = 385/480 (80%), Gaps = 2/480 (0%)
Strand = Plus / Minus
Query: 587 ggccagtgggagtttcaagttggacctgcagttggtatctcagccggagatgaattgtgg 646
||||||||||| ||||||||||| ||| | |||||||| || || || |||||||| |||
Sbjct: 695 ggccagtgggaatttcaagttggcccttctgttggtatttctgctggtgatgaattatgg 636
Query: 647 gttgctcgctacattttggagaggattacagagattgctggagttgtgctttcttttgat 706
|||||||| |||||| | ||| | || || || ||||| ||||| || |||||||||||
Sbjct: 635 gttgctcgatacattcttgagcgaatcaccgaaattgcaggagtcgtcctttcttttgac 576
Query: 707 cctaagccaattcagggtgactggaatggagcaggtgcacatacaaattacagtacaaag 766
|| || |||||||||||||| ||||||||||| ||||| || || |||||||| || |||
Sbjct: 575 ccaaaaccaattcagggtgattggaatggagctggtgctcacaccaattacagcaccaag 516
Query: 767 tcaatgagaaatgatggagg-ctatgaggtcatcaagaaagcaattgaaaagctggggtt 825
||||||||||||||||| || ||| | || || ||||| || ||||| ||| |||| |
Sbjct: 515 tcaatgagaaatgatggtggacta-gctgttataaagaaggctattgagaagttgggtct 457
Query: 826 gaggcacaaaaaacacattgctgcatatggtgaaggcaatgagcgccgactcacggggcg 885
| | || || | || || ||||| ||||| || || |||||| | || | || || ||
Sbjct: 456 gcgtcataaggagcatatagctgcctatggagagggtaatgagagaagattgacaggtcg 397
Query: 886 acatgaaacagctgacatcaacactttcaaatggggtgttgcagaccgtggagcatctgt 945
||||| || ||||| ||| |||||||| ||||| |||||| | | ||||| ||| |
Sbjct: 396 ccatgagactgctgatatccacactttctcttggggagttgcaaataggggagcttctat 337
Query: 946 tcgcgttggccgggatacagaaaaggaaggaaaagggtattttgaggacagaaggcctgc 1005
||| |||||||| || ||||| || |||||||| ||||||||||| |||||||| ||
Sbjct: 336 tcgtgttggccgtgacacagagaaaagtggaaaaggttattttgaggatagaaggccagc 277
Query: 1006 atcaaacatggatccatatgttgttacttccatgattgcagaaaccaccatcctgtggaa 1065
|||||||||||||||||||||||| || || ||||| || ||||||||||| || |||||
Sbjct: 276 atcaaacatggatccatatgttgtcacctcaatgatcgctgaaaccaccattctctggaa 217