Jatropha Genome Database

JcCA0302081.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0302081.10 + phase: 1 /partial
         (164 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|262091005|gb|GT229363.1|GT229363 JC928 Jatropha seeds from fr...   325   8e-90
gi|237680001|gb|GO247306.1|GO247306 JcrME_RL0850 Expressed seque...   258   2e-69

>gi|262091005|gb|GT229363.1|GT229363 JC928 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL22SE.E05.scf 5', mRNA sequence
          Length = 585

 Score =  325 bits (164), Expect = 8e-90
 Identities = 164/164 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagaaaatccccatgtggcgaaggaaccaacacatgggacagatttgagctccgtgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ccagaaaatccccatgtggcgaaggaaccaacacatgggacagatttgagctccgtgtcc 405

                                                                       
Query: 61  acaagcgtgttattgacctgttcagttcacctgaggtggtcaaacaaatcacttccatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 acaagcgtgttattgacctgttcagttcacctgaggtggtcaaacaaatcacttccatta 465

                                                       
Query: 121 caattgaacctggtgttgaggtggaagttacaattgcagattca 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 caattgaacctggtgttgaggtggaagttacaattgcagattca 509


>gi|237680001|gb|GO247306.1|GO247306 JcrME_RL0850 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 330

 Score =  258 bits (130), Expect = 2e-69
 Identities = 142/146 (97%)
 Strand = Plus / Minus

                                                                       
Query: 19  gcgaaggaaccaacacatgggacagatttgagctccgtgtccacaagcgtgttattgacc 78
           |||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 330 gcgaaggaaccaaacaatgggacagatttgagcttcgtgtccacaagcgtgttattgacc 271

                                                                       
Query: 79  tgttcagttcacctgaggtggtcaaacaaatcacttccattacaattgaacctggtgttg 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgttcagttcacctgaggtggtcaaacaaatcacttccattacaattgaacctggtgttg 211

                                     
Query: 139 aggtggaagttacaattgcagattca 164
           ||||||||||||||||||||||||||
Sbjct: 210 aggtggaagttacaattgcagattca 185