Jatropha Genome Database

JcCA0301531.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0301531.10 + phase: 0 /pseudo/partial
         (1158 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268526138|gb|FM891394.1|FM891394 FM891394 Jatropha curcas emb...   912   0.0  
gi|268518242|gb|FM888516.1|FM888516 FM888516 Jatropha curcas emb...    84   4e-16

>gi|268526138|gb|FM891394.1|FM891394 FM891394 Jatropha curcas embryo
            56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001671,
            mRNA sequence
          Length = 523

 Score =  912 bits (460), Expect = 0.0
 Identities = 469/473 (99%)
 Strand = Plus / Plus

                                                                        
Query: 686  aaatggctgatgataatgaacatgagaaacaatatcaagctggtctcctgcatacgaggg 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17   aaatggctgatgataatgaacatgagaaacaatatcaagctggtctcctgcatacgaggg 76

                                                                        
Query: 746  acaatcaaggcaaagctcaaaatggttcgacaaggagttgtactaaggttcaaaagcagg 805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77   acaatcaaggcaaagctcaaaatggttcgacaaggagttgtactaaggttcaaaagcagg 136

                                                                        
Query: 806  ggattgcacttggtaggtctgttgaccttactaagttcggcaattatgatgagttgattg 865
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137  ggattgcacttggtaggtctgttgaccttactaagttcggcaattatgatgagttgattg 196

                                                                        
Query: 866  ctgaattggataggttgtttgagtttgacggtgaactcctggctcccaaaaggaattggt 925
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197  ctgaattggataggttgtttgagtttgacggtgaactcctggctcccaaaaggaattggt 256

                                                                        
Query: 926  tgattgtgtatacggatgatgaaggcgatatgatgcttgttggagatgatccctggcagg 985
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257  tgattgtgtatacggatgatgaaggcgatatgatgcttgttggagatgatccctggcagg 316

                                                                        
Query: 986  aatttgttggcatggctcggaagattttcatctacactagagaggaggtgcagaagatga 1045
            ||||||||||||||||||||||||||||||||| | ||||||||||||| || |||||||
Sbjct: 317  aatttgttggcatggctcggaagattttcatctncnctagagaggaggtacanaagatga 376

                                                                        
Query: 1046 atccagggaccctgaattcaaagggggatgagaatttgttggaggtggacggtgtggatg 1105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377  atccagggaccctgaattcaaagggggatgagaatttgttggaggtggacggtgtggatg 436

                                                                 
Query: 1106 caaaagaagtgaaacgtttgccacttccttcagcacatagcaccgagaattgt 1158
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437  caaaagaagtgaaacgtttgccacttccttcagcacatagcaccgagaattgt 489


>gi|268518242|gb|FM888516.1|FM888516 FM888516 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001943,
            mRNA sequence
          Length = 485

 Score = 83.8 bits (42), Expect = 4e-16
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                      
Query: 1117 aaacgtttgccacttccttcagcacatagcaccgagaattgt 1158
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    aaacgtttgccacttccttcagcacatagcaccgagaattgt 42