Jatropha Genome Database

JcCA0301341.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0301341.10 - phase: 0 
         (1512 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed seque...   650   0.0  
gi|268519759|gb|FM888226.1|FM888226 FM888226 Jatropha curcas emb...   202   8e-52
gi|237680502|gb|GO246714.1|GO246714 JcrME_RL0258 Expressed seque...    76   1e-13

>gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed sequence
            tags from Jatropha curcas root cDNA library Jatropha
            curcas cDNA, mRNA sequence
          Length = 619

 Score =  650 bits (328), Expect = 0.0
 Identities = 532/600 (88%)
 Strand = Plus / Plus

                                                                        
Query: 568  gttggtcataaaagcaaaaaccaagaagcattgctaagacttattgatgatataattgaa 627
            |||||||||||||||||||||||||| || ||| ||  | |||||||||| ||| ||| |
Sbjct: 14   gttggtcataaaagcaaaaaccaagaggcgttgttagaagttattgatgacatagttgta 73

                                                                        
Query: 628  tcaataggaggtgttggtatagctgatatatttccttccttaaaatggcttccttcagtc 687
            |||  |||||||| | |||||| |||||| ||||||||| || ||||||||||| | | |
Sbjct: 74   tcaggaggaggtgctagtatagttgatatctttccttccctacaatggcttcctactgcc 133

                                                                        
Query: 688  caaagggaaaggtctagaattaggaaattgcattatgaaacagatgagatccttgaagat 747
             | |||||||| || |||||| ||||||||||  |  | ||||||||||| || ||||||
Sbjct: 134  aagagggaaagatcaagaatttggaaattgcaccaaaatacagatgagattctcgaagat 193

                                                                        
Query: 748  attttacaagagcatagagctaacaggcaggcagcggcttccaggaatggcgatcagagg 807
            || |||||||||||||||||||| || |||||  | ||||||| |||| | |||  ||| 
Sbjct: 194  atcttacaagagcatagagctaaaagacaggcgacagcttccaagaattgggataggagc 253

                                                                        
Query: 808  ggagctgataattttcttgatgttcttttggatcttcaacaaagtggaaatcttgatgtt 867
            | |||||||||| |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 254  gaagctgataatcttcttgatgttcttttggatcttcaacagagcggaaatcttgatgtt 313

                                                                        
Query: 868  cctttaactgatgtcgccatcaaagcagcaatcattgatatgtttggagctggaagcgac 927
            |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 314  cctttaactgatgtcgccatcaaagcagcaattattgatatgtttggtgctggaagcgac 373

                                                                        
Query: 928  acatcctcaaaaaccgcagaatgggcaatggctgagttgatgaggaatccagaaataatg 987
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 374  acatcctcaaaaactgcagaatgggcaatggctgagttgatgaggaatccagaagtaatg 433

                                                                        
Query: 988  aagaaagcacaagaagaactgcggaatttctttggtgaaaatggaaaggttgacgaagca 1047
            |||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 434  aagaaagcacaagaagaattgcggaatttctttggtgaaaatggaaaggatgaggaagca 493

                                                                        
Query: 1048 aaacttcaagaattaaaatggttatatttaattaataaagaaacactgagattacatcct 1107
            |||||||| |||||||||||| || | ||||||| |||||||||| ||||||||||||||
Sbjct: 494  aaacttcacgaattaaaatggataaagttaattattaaagaaacattgagattacatcct 553

                                                                        
Query: 1108 gcagtagctgtagttccaagggtttgtagggaaaggactaaggtgagtggatatgacgtt 1167
            ||||| |||||| ||||||||||||||||||||| |||||| ||   |||||||||||||
Sbjct: 554  gcagtggctgtaattccaagggtttgtagggaaaagactaaagtttatggatatgacgtt 613


>gi|268519759|gb|FM888226.1|FM888226 FM888226 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001583,
            mRNA sequence
          Length = 258

 Score =  202 bits (102), Expect = 8e-52
 Identities = 126/134 (94%)
 Strand = Plus / Minus

                                                                        
Query: 1375 gcaaacttgctatatcattttgactggaaatttcctaaaggagtaactgcagaaaatctt 1434
            ||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 241  gcaaactggctatatcatttgtactggaaatttcctaaaggagtaactgcagaaaatctt 182

                                                                        
Query: 1435 gacatgaacgaagcttttggagcagctgtcaaaagaaaagtagaccttgaattggttccc 1494
            |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct: 181  gacatgaatgaagcttttggaggagctgtcaaaagaaaagtagaccttgaattgatcccc 122

                          
Query: 1495 attccataccgtcc 1508
            ||||||| ||||||
Sbjct: 121  attccattccgtcc 108


>gi|237680502|gb|GO246714.1|GO246714 JcrME_RL0258 Expressed sequence
            tags from Jatropha curcas root cDNA library Jatropha
            curcas cDNA, mRNA sequence
          Length = 700

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 86/102 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1309 tttggagcaggaaaaagaatatgccctggaatgactctaggtatggctaatctggagatt 1368
            ||||| || ||||| ||||| ||||||||||||||  |||| ||  | ||||| ||  ||
Sbjct: 340  tttggtgcgggaaagagaatttgccctggaatgacattagggataacaaatcttgaactt 399

                                                      
Query: 1369 ttcctggcaaacttgctatatcattttgactggaaatttcct 1410
            ||||||||||| ||||||||||||||||| |||||| |||||
Sbjct: 400  ttcctggcaaatttgctatatcattttgattggaaacttcct 441