Jatropha Genome Database

JcCA0300271.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0300271.10 + phase: 0 /partial
         (1467 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516503|gb|FM889663.1|FM889663 FM889663 Jatropha curcas emb...   751   0.0  
gi|268525487|gb|FM896129.1|FM896129 FM896129 Jatropha curcas emb...   702   0.0  

>gi|268516503|gb|FM889663.1|FM889663 FM889663 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003373,
            mRNA sequence
          Length = 444

 Score =  751 bits (379), Expect = 0.0
 Identities = 420/427 (98%), Gaps = 5/427 (1%)
 Strand = Plus / Minus

                                                                        
Query: 878  ccattaaggatagcaaccagcaaagcacctt-caattgtccttcacagaacaattatcaa 936
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444  ccattaaggatagcaaccagcaaagcacctttcaattgtccttcacagaacaattatcaa 385

                                                                        
Query: 937  cctg-cgactgaatt-ggttgagaagcaccatgatggacgacccaagagcaatttcatgc 994
            |||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384  cctgtcgactggatttggttgagaagcaccatgatggacgacccaagagcaatttcatgc 325

                                                                        
Query: 995  agatactgttgttcaattgtatgtctgtgcgggatcctcagcttcttctcccacgactga 1054
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324  agatactgttgttcaattgtatgtctgtgcgggatcctcagcttcttctcccacgactga 265

                                                                        
Query: 1055 tgaaaacatgtgctagtcatggtgtcagcttcaagaaggcgctctttgtaccaaatgtat 1114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264  tgaaaacatgtgctagtcatggtgtcagcttcaagaaggcgctctttgtaccaaatgtat 205

                                                                        
Query: 1115 cggtgtattacaaggttggatctcaatctttgccccaaacagatgttgatttgtcgtggc 1174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204  cggtgtattacaaggttggatctcaatctttgccccaaacagatgttgatttgtcgtggc 145

                                                                        
Query: 1175 agtttacttc-gcaaaaattatgggaaaaccttgtc-cggggtgataaaggtggggaggc 1232
            |||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 144  agtttacttcagcaaaaattatgggaaaacattgtctcggggtgataaaggtggggaggc 85

                                                                        
Query: 1233 caataatgcaggacctgtttgtgaagaagttaaagatgatacaggaactagtgttaggac 1292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84   caataatgcaggacctgtttgtgaagaagttaaagatgatacaggaactagtgttaggac 25

                   
Query: 1293 ttgcgaa 1299
            |||||||
Sbjct: 24   ttgcgaa 18


>gi|268525487|gb|FM896129.1|FM896129 FM896129 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003286,
           mRNA sequence
          Length = 370

 Score =  702 bits (354), Expect = 0.0
 Identities = 363/366 (99%)
 Strand = Plus / Plus

                                                                       
Query: 301 gttgctattctggaggtcgggttaggtggaaggtttgatgcaactaatgtggttcaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   gttgctattctggaggtcgggttaggtggaaggtttgatgcaactaatgtggttcaaaca 64

                                                                       
Query: 361 cctattgtgtgtggtatagcttcccttgggtacgaccacatggagattcttggaaatact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  cctattgtgtgtggtatagcttcccttgggtacgaccacatggagattcttggaaatact 124

                                                                       
Query: 421 cttggtgaaattgctggggagaaggctggtatctttaagcatgggattccagcctttaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cttggtgaaattgctggggagaaggctggtatctttaagcatgggattccagcctttaca 184

                                                                       
Query: 481 gtgcctcaacctgatgaagcaatgcgtgtacttgaggagaaggcttctaagttagatgta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtgcctcaacctgatgaagcaatgcgtgtacttgaggagaaggcttctaagttagatgta 244

                                                                       
Query: 541 cctcttcaagtggcaccaccattagattccaacttgctaaacggtttacaacttgggctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cctcttcaagtggcaccaccattagattccaacttgctaaacggtttacaacttgggctt 304

                                                                       
Query: 601 gaaggtgagcaccaatatataaatgccggccttgccattgcactagcttctaaatggctt 660
           ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 305 gaatgtgagcaccaatatatatatgccggccttgccattgcactatcttctaaatggctt 364

                 
Query: 661 caaaga 666
           ||||||
Sbjct: 365 caaaga 370