Jatropha Genome Database

JcCA0291241.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0291241.20 - phase: 0 /pseudo/partial
         (1272 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522729|gb|FM896172.1|FM896172 FM896172 Jatropha curcas emb...  1003   0.0  

>gi|268522729|gb|FM896172.1|FM896172 FM896172 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003340,
           mRNA sequence
          Length = 599

 Score = 1003 bits (506), Expect = 0.0
 Identities = 531/541 (98%), Gaps = 10/541 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctctaatgctatggctttgcttcctaatcttcccatctatcctggctttggccacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  ctctctaatgctatggctttgcttcctaatcttcccatctatcctggctttggccacttc 118

                                                                       
Query: 61  agaatcggagctgacttctctgactcgggagctgctgaaatcggcgagagagcccgagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 agaatcggagctgacttctctgactcgggagctgctgaaatcggcgagagagcccgagtt 178

                                                                       
Query: 121 cttcgattggttaaaacaaactaggaggaaattgcacgagtatccagaattggccttcga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cttcgattggttaaaacaaactaggaggaaattgcacgagtatccagaattggccttcga 238

                                                                       
Query: 181 agagtacaacacgagtcaagtcataagatcggaactcgactcactcggaatagagtataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 agagtacaacacgagtcaagtcataagatcggaactcgactcactcggaatagagtataa 298

                                                                       
Query: 241 atggcctattgcgaagactgggttggttggttcgattgggtcaggggtccagccatggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 atggcctattgcgaagactgggttggttggttcgattgggtcaggggtccagccatggtt 358

                                                                       
Query: 301 cggtcttagagcagatatggacgctctccctattc----------agagtgggagcacaa 350
           |||||||||||||||||||||||||||||||||||          |||||||||||||||
Sbjct: 359 cggtcttagagcagatatggacgctctccctattcaggaattggtagagtgggagcacaa 418

                                                                       
Query: 351 gagcaagatcaatggccaaatgcatgcttgtggccatgatgctcacgttacaatgctgct 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gagcaagatcaatggccaaatgcatgcttgtggccatgatgctcacgttacaatgctgct 478

                                                                       
Query: 411 tggagcagctaagttacttcaacgcaagaaagataagttaaagggtactgttaagcttgt 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tggagcagctaagttacttcaacgcaagaaagataagttaaagggtactgttaagcttgt 538

                                                                       
Query: 471 cttccaacctggggaagaagggcatgccggtgcttaccatatgttgaaagaaggagccct 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cttccaacctggggaagaagggcatgccggtgcttaccatatgttgaaagaaggagccct 598

            
Query: 531 t 531
           |
Sbjct: 599 t 599