Jatropha Genome Database

JcCA0290791.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0290791.10 + phase: 1 /partial
         (1178 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237680682|gb|GO246894.1|GO246894 JcrME_RL0438 Expressed seque...   632   0.0  
gi|268522729|gb|FM896172.1|FM896172 FM896172 Jatropha curcas emb...    74   4e-13

>gi|237680682|gb|GO246894.1|GO246894 JcrME_RL0438 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 514

 Score =  632 bits (319), Expect = 0.0
 Identities = 348/355 (98%), Gaps = 2/355 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagggcagttgagcttgctaatgacccagatacagtgaattggatgaaggatattagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 atagggcagttgagcttgctaatgacccagatacagtgaattggatgaaggatattagga 211

                                                                       
Query: 61  gaaaaattcacgaaaacccagaacttgcatttgaagaattcgaaacgagtaagataatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaaaaattcacgaaaacccagaacttgcatttgaagaattcgaaacgagtaagataatca 271

                                                                       
Query: 121 ggcatgaactcgatcaacttggtattgcctatcgatggcccgtcgctaaaactggtgtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggcatgaactcgatcaacttggtattgcctatcgatggcccgtcgctaaaactggtgtag 331

                                                                       
Query: 181 tggcgactattgggtctggttcgccaccctttgttgccttaagagctgatatggatgctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tggcgactattgggtctggttcgccaccctttgttgccttaagagctgatatggatgctc 391

                                                                       
Query: 241 tgcctatccaggaattgactgaatgggagcacaagagtaaagtagatgggaaaatgcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 392 tgcctatccaggaattgactgaatgggagcacaagagtaaagtaatggggaaaatgcatg 451

                                                                  
Query: 301 cctgtggccatgatggacatgtcgcaatgcttcttggagcagctaaaatcctgca 355
           |||||||||  |||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 452 cctgtggcc-ggatggacatgtcccaatgcttcttggagca-ctaaaatcctgca 504


>gi|268522729|gb|FM896172.1|FM896172 FM896172 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003340,
           mRNA sequence
          Length = 599

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 103/125 (82%)
 Strand = Plus / Plus

                                                                       
Query: 222 agagctgatatggatgctctgcctatccaggaattgactgaatgggagcacaagagtaaa 281
           ||||| |||||||| ||||| ||||| |||||||||   || |||||||||||||| || 
Sbjct: 366 agagcagatatggacgctctccctattcaggaattggtagagtgggagcacaagagcaag 425

                                                                       
Query: 282 gtagatgggaaaatgcatgcctgtggccatgatggacatgtcgcaatgcttcttggagca 341
            |  ||||  |||||||||| |||||||||||||  || ||  ||||||| |||||||||
Sbjct: 426 atcaatggccaaatgcatgcttgtggccatgatgctcacgttacaatgctgcttggagca 485

                
Query: 342 gctaa 346
           |||||
Sbjct: 486 gctaa 490