Jatropha Genome Database

JcCA0290321.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0290321.10 + phase: 0 
         (1512 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed seque...   515   e-146
gi|268519759|gb|FM888226.1|FM888226 FM888226 Jatropha curcas emb...   155   2e-37
gi|237680502|gb|GO246714.1|GO246714 JcrME_RL0258 Expressed seque...    64   5e-10

>gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed sequence
            tags from Jatropha curcas root cDNA library Jatropha
            curcas cDNA, mRNA sequence
          Length = 619

 Score =  515 bits (260), Expect = e-146
 Identities = 506/588 (86%)
 Strand = Plus / Plus

                                                                        
Query: 564  tgctgttggtcatagaagcaaaaatcaagaaggattgttaaaagttattgatgaagcagt 623
            |||||||||||||| ||||||||| ||||| |  |||||| |||||||||||||   |||
Sbjct: 10   tgctgttggtcataaaagcaaaaaccaagaggcgttgttagaagttattgatgacatagt 69

                                                                        
Query: 624  tttagcttcatcaggtgttaatatagctgatatctttccttccttacaatggcttccttc 683
            | || |   |  ||||| || ||||| |||||||||||||||| |||||||||||||| |
Sbjct: 70   tgtatcaggaggaggtgctagtatagttgatatctttccttccctacaatggcttcctac 129

                                                                        
Query: 684  agtcaaaagggaaaggtctagaatttggaaaacgcatcgtgaaacagataagattctcga 743
             | ||| |||||||| || ||||||||||||  ||| |   | |||||| ||||||||||
Sbjct: 130  tgccaagagggaaagatcaagaatttggaaattgcaccaaaatacagatgagattctcga 189

                                                                        
Query: 744  agatgttttgcaagagcatagagctaacaggaaggcggcagttcccaagaatggagatca 803
            |||| | || ||||||||||||||||| ||  ||||| ||| | |||||||| | |||  
Sbjct: 190  agatatcttacaagagcatagagctaaaagacaggcgacagcttccaagaattgggatag 249

                                                                        
Query: 804  gagccaagctgataatcttcttgatgttcttttggatcttcaagaaagtggaaatcttga 863
            |||| |||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 250  gagcgaagctgataatcttcttgatgttcttttggatcttcaacagagcggaaatcttga 309

                                                                        
Query: 864  tgttcccttacctgatgccgccatcaaaggaacaatcatggaaatgtttggggctggcag 923
            |||||| ||| |||||| ||||||||||| | |||| || || |||||||| ||||| ||
Sbjct: 310  tgttcctttaactgatgtcgccatcaaagcagcaattattgatatgtttggtgctggaag 369

                                                                        
Query: 924  cgacacgtcctcaaaaacagtagaatgggcaatggcagagttgatgaggaatccagaagt 983
            |||||| ||||||||||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct: 370  cgacacatcctcaaaaactgcagaatgggcaatggctgagttgatgaggaatccagaagt 429

                                                                        
Query: 984  aatgagaaaagcacaagaagaattgcggagtttctttggtgaaaatggagaggttgagga 1043
            |||||  |||||||||||||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct: 430  aatgaagaaagcacaagaagaattgcggaatttctttggtgaaaatggaaaggatgagga 489

                                                                        
Query: 1044 tgcaaaaattcaggaattaaaatgtttaaagttaattattaaagaaacattgagattaca 1103
             |||||| |||| |||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 490  agcaaaacttcacgaattaaaatggataaagttaattattaaagaaacattgagattaca 549

                                                            
Query: 1104 tcctccaggtgcagtaattccaaggctttgtagggaaagaactaaagt 1151
            |||| |||  || |||||||||||| ||||||||||||  ||||||||
Sbjct: 550  tcctgcagtggctgtaattccaagggtttgtagggaaaagactaaagt 597


>gi|268519759|gb|FM888226.1|FM888226 FM888226 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001583,
            mRNA sequence
          Length = 258

 Score =  155 bits (78), Expect = 2e-37
 Identities = 120/134 (89%)
 Strand = Plus / Minus

                                                                        
Query: 1373 ttgcaaacttgctatatcattttgactggaaatttcctcaaggaataacagcagagaatc 1432
            ||||||||| ||||||||||||  |||||||||||||| ||||| |||| ||||| ||||
Sbjct: 243  ttgcaaactggctatatcatttgtactggaaatttcctaaaggagtaactgcagaaaatc 184

                                                                        
Query: 1433 tcgacatgaatgaatgttttggaggagctgtcaaaagaaaagtagaccttgaactcattc 1492
            | ||||||||||||  ||||||||||||||||||||||||||||||||||||| | || |
Sbjct: 183  ttgacatgaatgaagcttttggaggagctgtcaaaagaaaagtagaccttgaattgatcc 124

                          
Query: 1493 ctattccattccgt 1506
            | ||||||||||||
Sbjct: 123  ccattccattccgt 110


>gi|237680502|gb|GO246714.1|GO246714 JcrME_RL0258 Expressed sequence
            tags from Jatropha curcas root cDNA library Jatropha
            curcas cDNA, mRNA sequence
          Length = 700

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                            
Query: 1363 gaacttttccttgcaaacttgctatatcattttgactggaaatttcct 1410
            ||||||||||| ||||| ||||||||||||||||| |||||| |||||
Sbjct: 394  gaacttttcctggcaaatttgctatatcattttgattggaaacttcct 441