Jatropha Genome Database

JcCA0290181.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0290181.10 - phase: 2 /partial
         (1792 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268521365|gb|FM894117.1|FM894117 FM894117 Jatropha curcas emb...   100   1e-20
gi|262090848|gb|GT229206.1|GT229206 JC771 Jatropha seeds from fr...    98   4e-20
gi|268525291|gb|FM895933.1|FM895933 FM895933 Jatropha curcas emb...    76   2e-13

>gi|268521365|gb|FM894117.1|FM894117 FM894117 Jatropha curcas embryo
            71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004301,
            mRNA sequence
          Length = 644

 Score = 99.6 bits (50), Expect = 1e-20
 Identities = 95/110 (86%)
 Strand = Plus / Plus

                                                                        
Query: 1376 attgttactattgttgaacaagaagcgaaccataatggtccggttttcttagaccgattt 1435
            ||||| || ||||||||||||||||| ||||| || ||||||||||| |||||||| |||
Sbjct: 10   attgtaaccattgttgaacaagaagcaaaccacaacggtccggtttttttagaccggttt 69

                                                              
Query: 1436 actgagtcattgcattattactcgactctgtttgactcgttagaaggatc 1485
            |||||  | |||||||| || |||| | ||||||||||||| ||||||||
Sbjct: 70   actgaagcgttgcattactattcgagtttgtttgactcgttggaaggatc 119


>gi|262090848|gb|GT229206.1|GT229206 JC771 Jatropha seeds from fruits
            at three stages of maturation Jatropha curcas cDNA clone
            PL18SE.D09.scf 5', mRNA sequence
          Length = 360

 Score = 97.6 bits (49), Expect = 4e-20
 Identities = 88/101 (87%)
 Strand = Plus / Plus

                                                                        
Query: 1385 attgttgaacaagaagcgaaccataatggtccggttttcttagaccgatttactgagtca 1444
            ||||||||||||||||| ||||| || ||||||||||| |||||||| ||||||||  | 
Sbjct: 67   attgttgaacaagaagcaaaccacaacggtccggtttttttagaccggtttactgaagcg 126

                                                     
Query: 1445 ttgcattattactcgactctgtttgactcgttagaaggatc 1485
            |||||||| || |||| | ||||||||||||| ||||||||
Sbjct: 127  ttgcattactattcgagtttgtttgactcgttggaaggatc 167


>gi|268525291|gb|FM895933.1|FM895933 FM895933 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002941,
           mRNA sequence
          Length = 548

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 98/118 (83%)
 Strand = Plus / Plus

                                                                       
Query: 117 ggtcatccgacatggcagaagtagctcaaaagcttgaacaacttgaagaagttatgtgta 176
           ||||||| |||||||| || || |||||||||||||||||||||||    || ||| |||
Sbjct: 241 ggtcatcggacatggccgacgttgctcaaaagcttgaacaacttgagatggtaatgggta 300

                                                                     
Query: 177 atgtacaggaagatggactttctcatctttcttctgaaactgttcattataatccttc 234
             |  || ||||||||  |||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 301 cagctcaagaagatgggatttctcatctttctactgatactgtacattataatccttc 358