Jatropha Genome Database

JcCA0289481.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0289481.10 + phase: 0 
         (483 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268521849|gb|FM892689.1|FM892689 FM892689 Jatropha curcas emb...   323   1e-88

>gi|268521849|gb|FM892689.1|FM892689 FM892689 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003305,
           mRNA sequence
          Length = 185

 Score =  323 bits (163), Expect = 1e-88
 Identities = 180/183 (98%), Gaps = 2/183 (1%)
 Strand = Plus / Plus

                                                                       
Query: 178 cttgaacttctcaaggatgataaatggctccacatagaccctattcctagcacactaatt 237
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5   cttgaacttctcaaggatgataaatggctccacatggaccctattcctagcacactaatt 64

                                                                       
Query: 238 ctcaaccttggagacatgatgcaggccattagcaatgatgagtacaaaagcgttacgcac 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ctcaaccttggagacatgatgcaggccattagcaatgatgagtacaaaagcgttacgcac 124

                                                                       
Query: 298 agagttaagacaaacaaagatacggagagattctcaatctgctactttgtatttccgggt 357
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 125 agagttaagacaaacaaagatacggagaga-tctc-atctgctactttgtatttccgggt 182

              
Query: 358 gaa 360
           |||
Sbjct: 183 gaa 185