Jatropha Genome Database
- JcCA0279561.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0279561.10 + phase: 0 /partial
(1140 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268525341|gb|FM895983.1|FM895983 FM895983 Jatropha curcas emb... 940 0.0
gi|268522595|gb|FM896636.1|FM896636 FM896636 Jatropha curcas emb... 129 8e-30
gi|218686978|gb|GH295946.1|GH295946 JCL395 Jatropha curcas total... 109 7e-24
gi|218687505|gb|GH295552.1|GH295552 JCL1 Jatropha curcas total l... 109 7e-24
gi|268522498|gb|FM894643.1|FM894643 FM894643 Jatropha curcas emb... 52 1e-06
gi|268522715|gb|FM896158.1|FM896158 FM896158 Jatropha curcas emb... 52 1e-06
>gi|268525341|gb|FM895983.1|FM895983 FM895983 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003106,
mRNA sequence
Length = 617
Score = 940 bits (474), Expect = 0.0
Identities = 477/478 (99%)
Strand = Plus / Minus
Query: 663 aaagattatcatagcatttgccgcagactggagagatcgtttagaccctccattgcctaa 722
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 617 aaagattatcatagcatttgccgcagactggagagatcgtgtagaccctccattgcctaa 558
Query: 723 gaattatattggttgttgtgttactacaaatcctatatttacagaagcagaaactctcat 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaattatattggttgttgtgttactacaaatcctatatttacagaagcagaaactctcat 498
Query: 783 tgacgagaatgggtttagctttgttgcaatgaagcttagcgatatgataaaaggattaga 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgacgagaatgggtttagctttgttgcaatgaagcttagcgatatgataaaaggattaga 438
Query: 843 gaaaggaattcttgcaggagaaaaggagaagcttggactcgttctgaagagtattgaagt 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaaaggaattcttgcaggagaaaaggagaagcttggactcgttctgaagagtattgaagt 378
Query: 903 aggtcatgaagatgtgatcgcagtttcagcttcaccaaaatttgaagtttatgagacgga 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aggtcatgaagatgtgatcgcagtttcagcttcaccaaaatttgaagtttatgagacgga 318
Query: 963 ttttgggtggggaagaccaaagaaggttgattttacatctatagactggaatggaggcat 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttttgggtggggaagaccaaagaaggttgattttacatctatagactggaatggaggcat 258
Query: 1023 ttctttgttgaagagcaaaggttcaaatggcggtgttgaggttggtatagttctggagaa 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttctttgttgaagagcaaaggttcaaatggcggtgttgaggttggtatagttctggagaa 198
Query: 1083 gcgtgaaatggagattttcaattcactatttgttaatggccttatagatatgtctaat 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gcgtgaaatggagattttcaattcactatttgttaatggccttatagatatgtctaat 140
>gi|268522595|gb|FM896636.1|FM896636 FM896636 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003906,
mRNA sequence
Length = 579
Score = 129 bits (65), Expect = 8e-30
Identities = 209/257 (81%)
Strand = Plus / Plus
Query: 37 ccaaatgatggtgtttcagtcactgttgcagagtcaaatgcagattttagttatctttcc 96
||||| ||||||||||| |||| |||||||||| || |||||||||| | ||||||
Sbjct: 320 ccaaacgatggtgtttccctcacaattgcagagtctaacgcagattttactcgtctttcg 379
Query: 97 ggtaaccatatgaatgaagctattgactcacatcaatatgtacctgagttggctatatct 156
| || || ||||||||||||||||| |||| | |||||| |||||||| |||||||||
Sbjct: 380 agcaatcagatgaatgaagctattgagtcacgtatatatgttcctgagttagctatatct 439
Query: 157 gactcaaaagcagcaatcttagcccttcaaataacgttatttcccaatcagggcttttcc 216
||||| |||| ||||| | ||| |||||||||| |||||||| || || |||||||||
Sbjct: 440 gactcgaaagtagcaactattgccattcaaataacattatttccaaaacaaggcttttcc 499
Query: 217 attggcgtcgcttctcaccatggcttcttagatggaaaaagcatagtcatgttcattaga 276
|||||| || ||| ||||||| | | ||||| ||||||| ||| |||||| || |
Sbjct: 500 attggcatctcttaccaccatgctgtacttgatggtaaaagcaaagtaatgttcgataaa 559
Query: 277 gcttgggctcacatatg 293
|||||||||||||||||
Sbjct: 560 gcttgggctcacatatg 576
>gi|218686978|gb|GH295946.1|GH295946 JCL395 Jatropha curcas total leaf
library Jatropha curcas cDNA, mRNA sequence
Length = 735
Score = 109 bits (55), Expect = 7e-24
Identities = 163/199 (81%)
Strand = Plus / Minus
Query: 932 cttcaccaaaatttgaagtttatgagacggattttgggtggggaagaccaaagaaggttg 991
|||||||||||||||| ||||||| ||| |||||||| | || |||||||||| ||| |
Sbjct: 590 cttcaccaaaatttgaggtttatgggacagattttggttttgggagaccaaagagggtgg 531
Query: 992 attttacatctatagactggaatggaggcatttctttgttgaagagcaaaggttcaaatg 1051
| |||||||||||||| || ||||||||||||| ||| ||||||||| | | ||
Sbjct: 530 agtttacatctatagatctgagtggaggcatttctatgtccgagagcaaagatgggagtg 471
Query: 1052 gcggtgttgaggttggtatagttctggagaagcgtgaaatggagattttcaattcactat 1111
| || ||||||||||| ||||| || || | | |||||||||| | |||||||| ||||
Sbjct: 470 gtggcattgaggttggtttagttttgaagcaacatgaaatggagttgttcaattctctat 411
Query: 1112 ttgttaatggccttataga 1130
|||||||||||||| ||||
Sbjct: 410 ttgttaatggccttctaga 392
>gi|218687505|gb|GH295552.1|GH295552 JCL1 Jatropha curcas total leaf
library Jatropha curcas cDNA, mRNA sequence
Length = 735
Score = 109 bits (55), Expect = 7e-24
Identities = 163/199 (81%)
Strand = Plus / Minus
Query: 932 cttcaccaaaatttgaagtttatgagacggattttgggtggggaagaccaaagaaggttg 991
|||||||||||||||| ||||||| ||| |||||||| | || |||||||||| ||| |
Sbjct: 590 cttcaccaaaatttgaggtttatgggacagattttggttttgggagaccaaagagggtgg 531
Query: 992 attttacatctatagactggaatggaggcatttctttgttgaagagcaaaggttcaaatg 1051
| |||||||||||||| || ||||||||||||| ||| ||||||||| | | ||
Sbjct: 530 agtttacatctatagatctgagtggaggcatttctatgtccgagagcaaagatgggagtg 471
Query: 1052 gcggtgttgaggttggtatagttctggagaagcgtgaaatggagattttcaattcactat 1111
| || ||||||||||| ||||| || || | | |||||||||| | |||||||| ||||
Sbjct: 470 gtggcattgaggttggtttagttttgaagcaacatgaaatggagttgttcaattctctat 411
Query: 1112 ttgttaatggccttataga 1130
|||||||||||||| ||||
Sbjct: 410 ttgttaatggccttctaga 392
>gi|268522498|gb|FM894643.1|FM894643 FM894643 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000453,
mRNA sequence
Length = 556
Score = 52.0 bits (26), Expect = 1e-06
Identities = 98/122 (80%)
Strand = Plus / Plus
Query: 100 aaccatatgaatgaagctattgactcacatcaatatgtacctgagttggctatatctgac 159
||||| ||||| ||||| ||||| |||| || ||| |||| || ||| ||||||||||
Sbjct: 397 aaccaaatgaaggaagcaattgagtcacgtctttatatacccgaattgaatatatctgac 456
Query: 160 tcaaaagcagcaatcttagcccttcaaataacgttatttcccaatcagggcttttccatt 219
|||| ||| || || |||| |||||||||| |||||||| |||| || |||||||||
Sbjct: 457 tcaacagctgccattatagctattcaaataactttatttccatatcaagggttttccatt 516
Query: 220 gg 221
||
Sbjct: 517 gg 518
>gi|268522715|gb|FM896158.1|FM896158 FM896158 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003323,
mRNA sequence
Length = 516
Score = 52.0 bits (26), Expect = 1e-06
Identities = 98/122 (80%)
Strand = Plus / Plus
Query: 100 aaccatatgaatgaagctattgactcacatcaatatgtacctgagttggctatatctgac 159
||||| ||||| ||||| ||||| |||| || ||| |||| || ||| ||||||||||
Sbjct: 389 aaccaaatgaaggaagcaattgagtcacgtctttatatacccgaattgaatatatctgac 448
Query: 160 tcaaaagcagcaatcttagcccttcaaataacgttatttcccaatcagggcttttccatt 219
|||| ||| || || |||| |||||||||| |||||||| |||| || |||||||||
Sbjct: 449 tcaacagctgccattatagctattcaaataactttatttccatatcaagggttttccatt 508
Query: 220 gg 221
||
Sbjct: 509 gg 510