Jatropha Genome Database

JcCA0279321.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0279321.10 - phase: 0 /partial
         (471 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520189|gb|FM890037.1|FM890037 FM890037 Jatropha curcas emb...   773   0.0  
gi|268523133|gb|FM894716.1|FM894716 FM894716 Jatropha curcas emb...    50   2e-06

>gi|268520189|gb|FM890037.1|FM890037 FM890037 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003825,
           mRNA sequence
          Length = 552

 Score =  773 bits (390), Expect = 0.0
 Identities = 397/398 (99%), Gaps = 1/398 (0%)
 Strand = Plus / Plus

                                                                       
Query: 74  cccttcctgagaggccaagagagccggattgtccgtacttcctaaaaacaaaaagatgca 133
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cccttcctgagaggccaaga-agccggattgtccgtacttcctaaaaacaaaaagatgca 59

                                                                       
Query: 134 agtatggtttgaattgcaaatttaatcatccgaaagacaagttggctttgtttcaaggtg 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  agtatggtttgaattgcaaatttaatcatccgaaagacaagttggctttgtttcaaggtg 119

                                                                       
Query: 194 gttcagaggataatgatggttttgccttaccggagaggccgtcagagcccacatgtgcat 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gttcagaggataatgatggttttgccttaccggagaggccgtcagagcccacatgtgcat 179

                                                                       
Query: 254 tctatatgaagactgggaaatgcaagtttggagcaacatgcaaattccatcatccaaaag 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tctatatgaagactgggaaatgcaagtttggagcaacatgcaaattccatcatccaaaag 239

                                                                       
Query: 314 atatccagatgcaatttggacaagagactaataacacagtgcagattggatcaacagtta 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atatccagatgcaatttggacaagagactaataacacagtgcagattggatcaacagtta 299

                                                                       
Query: 374 ctatggaaggaacaactggagatttcaatgtggttaaggcttccatttcattgaccccag 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctatggaaggaacaactggagatttcaatgtggttaaggcttccatttcattgaccccag 359

                                                 
Query: 434 ccttaggtcataattccaaaggacttccaataagactg 471
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ccttaggtcataattccaaaggacttccaataagactg 397


>gi|268523133|gb|FM894716.1|FM894716 FM894716 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000554,
           mRNA sequence
          Length = 230

 Score = 50.1 bits (25), Expect = 2e-06
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 253 ttctatatgaagactgggaaatgcaagtttggagcaacatgcaaattccatca 305
           ||||| |||||||||||  ||||||||||||||| ||  ||||| ||||||||
Sbjct: 157 ttctacatgaagactggtgaatgcaagtttggagaaaggtgcaagttccatca 209