Jatropha Genome Database

JcCA0277661.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0277661.10 - phase: 0 
         (753 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523326|gb|FM894092.1|FM894092 FM894092 Jatropha curcas emb...  1001   0.0  

>gi|268523326|gb|FM894092.1|FM894092 FM894092 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_005067,
           mRNA sequence
          Length = 541

 Score = 1001 bits (505), Expect = 0.0
 Identities = 534/540 (98%), Gaps = 4/540 (0%)
 Strand = Plus / Plus

                                                                       
Query: 55  tccatttccaaaccctccctttctttctcatctcctcggtctataaaactcccctctatt 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   tccatttccaaaccctccctttctttctcatctcctcggtctataaaactcccctctatt 62

                                                                       
Query: 115 catccacactcaaccttcaaaccgctcacctccaacgcgcgttctgtcctcgttccacgc 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  catccacactcaaccttcaaaccgctcacctccaacgcgcgttctgtcctcgttccacgc 122

                                                                       
Query: 175 tccaccgccactccctcttccaccacttccacaatcgcaaccacttttcatggactctgc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tccaccgccactccctcttccaccacttccacaatcgcaaccacttttcatggactctgc 182

                                                                       
Query: 235 tacgttgttggagacaacatcgacaccgaccaaataattcccgccgagtatctaaccctt 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tacgttgttggagacaacatcgacaccgaccaaataattcccgccgagtatctaaccctt 242

                                                                       
Query: 295 gtaccttcaaacccagccgaatacgaaaagcttggctcttatgccttaattggccttcca 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtaccttcaaacccagccgaatacgaaaagcttggctcttatgccttaattggccttcca 302

                                                                       
Query: 355 gcctcttatgaaaccaggttcattgaacc-gggtgaaacgaagaccaaatactcaatagt 413
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 303 gcctcttatgaaaccaggttcattgaaccngggtgaaacgaagaccaaatactcaatagt 362

                                                                       
Query: 414 gattggaggcgataattttggatgcggatcatcgcgtgagcacgcgccggtggctctt-- 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 363 gattggaggcgataattttggatgcggatcatcgcgtgagcacgcgccggtggctcttga 422

                                                                       
Query: 472 ggtgcggctggcgttgcggctgtggttgcggaatcttatgctcggatcttcttcaggaac 531
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gctgcggctggcgttgcggctgtggttgcggaatcttatgctcggatcttcttcaggaac 482

                                                                       
Query: 532 tcggtggccaccggagaaatttatcctctggaatcagaggttaggatttgtgaggaatgc 591
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tcggtggccaccgga-aaaattatcctctggaatcagaggttaggatttgtgaggaatgc 541