Jatropha Genome Database

JcCA0273631.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0273631.30 - phase: 1 /partial
         (200 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522602|gb|FM896643.1|FM896643 FM896643 Jatropha curcas emb...   109   1e-24

>gi|268522602|gb|FM896643.1|FM896643 FM896643 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003913,
           mRNA sequence
          Length = 227

 Score =  109 bits (55), Expect = 1e-24
 Identities = 96/107 (89%), Gaps = 2/107 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacccagatgcagaagtgatggctttatcaccaaagacttta-atggcaacaaacaga 59
           |||||||||||||||||||||| || ||||| ||||||||||||  | || ||||| |||
Sbjct: 121 cagacccagatgcagaagtgatagcattatctccaaagactttatttagctacaaataga 180

                                                          
Query: 60  tttgtatgtga-gatctgtaacaaagggtttcaaagagatcagaatc 105
           || |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 181 ttcgtatgtgaggatctgtaacaaaggttttcaaagagatcagaatc 227