Jatropha Genome Database

JcCA0266291.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0266291.10 - phase: 0 /TE/partial
         (1119 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516665|gb|FM887144.1|FM887144 FM887144 Jatropha curcas emb...   311   9e-85

>gi|268516665|gb|FM887144.1|FM887144 FM887144 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000247,
            mRNA sequence
          Length = 564

 Score =  311 bits (157), Expect = 9e-85
 Identities = 281/321 (87%), Gaps = 1/321 (0%)
 Strand = Plus / Plus

                                                                        
Query: 799  tataaaacagcattcacagttccatttggtcaatatgaatggaatgtaatgccttttgga 858
            |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1    tataaaacagcatttaccgttccatttggtcaatacgaatggaatgtaatgccttttgga 60

                                                                        
Query: 859  ttaaaaaatgctccttctgaatttcagaggatcatgaatgacatatttaatccctatagt 918
            ||||||||||||||||||||||||||||||||||||||||| || ||||| || | |  |
Sbjct: 61   ttaaaaaatgctccttctgaatttcagaggatcatgaatgatatttttaacccatgttat 120

                                                                        
Query: 919  aaattttgtatagtatacattgatgatgtgttaatatttagtcaaactattgatgatcat 978
            ||||||||||| || || |||||||||||| | |||||||||  |||| | || ||||||
Sbjct: 121  aaattttgtattgtttatattgatgatgtgcttatatttagtacaactctagaagatcat 180

                                                                        
Query: 979  tttaaacacttaaaaactttttgtatggtaattaggcaaaatggtttagcacttagtaaa 1038
            |||||||| |||||||| ||||||||| | ||   | |||||||||||||| | ||||||
Sbjct: 181  tttaaacatttaaaaacattttgtatgatcatcgagaaaaatggtttagcattaagtaaa 240

                                                                        
Query: 1039 acaaagatggatctattcaaaactaaaattagatttttaggccattatattgaacaaggt 1098
             |  | |||||| | || ||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 241  gctgaaatggatttgtttaaaactaaaataagatttttaggccattatatagaacaaggt 300

                                 
Query: 1099 aaagattcaacctatagaaag 1119
             ||||||||||||||||||||
Sbjct: 301  -aagattcaacctatagaaag 320