Jatropha Genome Database

JcCA0265541.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0265541.20 - phase: 0 /TE/partial
         (1189 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523072|gb|FM896515.1|FM896515 FM896515 Jatropha curcas emb...  1102   0.0  

>gi|268523072|gb|FM896515.1|FM896515 FM896515 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003746,
           mRNA sequence
          Length = 560

 Score = 1102 bits (556), Expect = 0.0
 Identities = 559/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 237 gacttcagtaaggaatttggcgcaagctttggcagttaaaaattccacctaaagttctaa 296
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 560 gacttcagtaaggaatttggcgcaagcttgggcagttaaaaattccacctaaagttctaa 501

                                                                       
Query: 297 actttatgtggagagctttgttagacattcttcctgttttttcagttttgcaaagaagac 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 actttatgtggagagctttgttagacattcttcctgttttttcagttttgcaaagaagac 441

                                                                       
Query: 357 gaattgaggtacctatactttgtcctcgatgtcatcaggaggatgaaacagttgcccatt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaattgaggtacctatactttgtcctcgatgtcatcaggaggatgaaacagttgcccatt 381

                                                                       
Query: 417 gtttactgtattgtccatttgcaaaagatgcgtggttatctacttctataggagggtggg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtttactgtattgtccatttgcaaaagatgcgtggttatctacttctataggagggtggg 321

                                                                       
Query: 477 gtaatgtttcgggcttaaataaatggtttgaattcttaatgcaacggatggatgatgcaa 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtaatgtttcgggcttaaataaatggtttgaattcttaatgcaacggatggatgatgcaa 261

                                                                       
Query: 537 aaacagggaggctagtgttgcggcttgggatttatggaatgctagaaacaagttgatttg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaacagggaggctagtgttgcggcttgggatttatggaatgctagaaacaagttgatttg 201

                                                                       
Query: 597 gcagcagcaagtacgtgattcagcggctattgtgagacatgtacagtattctcttaatgc 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gcagcagcaagtacgtgattcagcggctattgtgagacatgtacagtattctcttaatgc 141

                                                                       
Query: 657 gtggcgaattgcgaactcgatagaggaatatcagttggtaccatgggagagtaatatgca 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gtggcgaattgcgaactcgatagaggaatatcagttggtaccatgggagagtaatatgca 81

                                                                       
Query: 717 aaacagatggcatccacttttgacaggtttcaaatgtaacgtggatgcaagttttgaccc 776
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  aaacagatggcatccacttttgacaggtttcaaatgtaacgtggatgcaagttttgaccc 21

                               
Query: 777 caattcggtccatgcagcag 796
           ||||||||||||||||||||
Sbjct: 20  caattcggtccatgcagcag 1