Jatropha Genome Database

JcCA0261891.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0261891.20 + phase: 0 /pseudo/partial
         (906 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518580|gb|FM888823.1|FM888823 FM888823 Jatropha curcas emb...   218   8e-57

>gi|268518580|gb|FM888823.1|FM888823 FM888823 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002318,
           mRNA sequence
          Length = 467

 Score =  218 bits (110), Expect = 8e-57
 Identities = 222/258 (86%), Gaps = 1/258 (0%)
 Strand = Plus / Minus

                                                                       
Query: 650 tatgatttt-gatgaaaacaagttctctggacccgttccatcatctattggaaacctcac 708
           ||||||||| ||| ||||||| ||||  |||||  | ||||| ||| |||||||||||||
Sbjct: 306 tatgattttcgatcaaaacaacttcttcggacctatgccatcttctcttggaaacctcac 247

                                                                       
Query: 709 taatttgaatagacttcattttgctgataataaccttcaaggtatgattccttcaagcct 768
            || ||||||| ||||  |||||||| |||||| ||||| ||||  ||||||||||| ||
Sbjct: 246 aaagttgaatacactttcttttgctggtaataagcttcagggtactattccttcaagtct 187

                                                                       
Query: 769 tgctaattgcaaatatttgcaattgctggacttttctcgaaacgatcttactggtgtctt 828
            ||||||||||| |||||||||  |||||| ||||||| |||| ||||||  ||| || |
Sbjct: 186 agctaattgcaactatttgcaagagctggatttttctcaaaacaatcttaggggtatcat 127

                                                                       
Query: 829 acctccacaagttattggcctctcatccttgtcaatttatgtcagttttgcacaaaacta 888
           ||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 126 acccccacaagttattggcctctcatccttgtcaatttatgttagtttagcacaaaacta 67

                             
Query: 889 tttcactggttcccttcc 906
           |||||| |||||||||||
Sbjct: 66  tttcaccggttcccttcc 49