Jatropha Genome Database

JcCA0259921.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0259921.10 - phase: 0 /partial
         (660 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523077|gb|FM896520.1|FM896520 FM896520 Jatropha curcas emb...   842   0.0  

>gi|268523077|gb|FM896520.1|FM896520 FM896520 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003752,
           mRNA sequence
          Length = 469

 Score =  842 bits (425), Expect = 0.0
 Identities = 438/441 (99%), Gaps = 1/441 (0%)
 Strand = Plus / Plus

                                                                       
Query: 205 atggtggcttctggcattttaatct-ggacattgctggaatacagtttgcatcgctttgt 263
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 29  atggtggcttctggcattttaatcttggacattgctggaatacagtttgcatcgctttgt 88

                                                                       
Query: 264 tttccacatcaaaacgaagacttattggtggaacaccttacactaccttattcacggctg 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  tttccacatcaaaacgaagacttattggtggaacaccttacactaccttattcacggctg 148

                                                                       
Query: 324 tcatcacaagcaccctatggatggtttgcggcttgtctttcctccagctgcaacagctgt 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tcatcacaagcaccctatggatggtttgcggcttgtctttcctccagctgcaacagctgt 208

                                                                       
Query: 384 tctttgtgtgccattctggaacttggttcaacttttcgctactccctcaactgctcctgc 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tctttgtgtgccattctggaacttggttcaacttttcgctactccctcaactgctcctgc 268

                                                                       
Query: 444 gttatttggaggtggtttgttgggttatgtgatgtacgactgtactcattattacttgca 503
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gttatttggaggtggtttgaagggttatgtgatgtacgactgtactcattattacttgca 328

                                                                       
Query: 504 tcatggtcagccatcaagtggagtaccaaaggatctcaagaaataccacttgaatcatca 563
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcatggtcagccatcaagtggagtaccaaaggatctcaagaaataccacttgaatcatca 388

                                                                       
Query: 564 cttcagaatccaaaatatgggttttggaatcacttcagccctgtgggacagggtgtttgg 623
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cttcagaatccaaaatatgggttttggaatcacttcagccctgtgggacagggtgtttgg 448

                                
Query: 624 aacacttcctccatcaaaagt 644
           |||||||||||||||||||||
Sbjct: 449 aacacttcctccatcaaaagt 469



 Score = 58.0 bits (29), Expect = 1e-08
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 180 ccataaaccttctgagatagccttgatgg 208
           |||||||||||||||||||||||||||||
Sbjct: 32  ccataaaccttctgagatagccttgatgg 4