Jatropha Genome Database

JcCA0259521.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0259521.10 - phase: 0 /partial
         (707 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522602|gb|FM896643.1|FM896643 FM896643 Jatropha curcas emb...   109   4e-24

>gi|268522602|gb|FM896643.1|FM896643 FM896643 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003913,
           mRNA sequence
          Length = 227

 Score =  109 bits (55), Expect = 4e-24
 Identities = 117/135 (86%), Gaps = 2/135 (1%)
 Strand = Plus / Plus

                                                                       
Query: 136 aagaagaagagaaatcttccaggcaacccagacccagaagcagaagtgatagctttgtct 195
           |||||||| ||||  |||||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 93  aagaagaaaagaagccttccaggaaacccagacccagatgcagaagtgatagcattatct 152

                                                                       
Query: 196 ccaaaaacacta-ttagcaacaaacagatttatatgtga-gatctgtaacaaaggatttc 253
           ||||| ||  || ||||| ||||| |||||  ||||||| ||||||||||||||| ||||
Sbjct: 153 ccaaagactttatttagctacaaatagattcgtatgtgaggatctgtaacaaaggttttc 212

                          
Query: 254 aaagagatcaaaatc 268
           |||||||||| ||||
Sbjct: 213 aaagagatcagaatc 227