Jatropha Genome Database

JcCA0257171.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0257171.20 - phase: 0 /pseudo/partial
         (717 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268526346|gb|FM891602.1|FM891602 FM891602 Jatropha curcas emb...   745   0.0  

>gi|268526346|gb|FM891602.1|FM891602 FM891602 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001924,
           mRNA sequence
          Length = 630

 Score =  745 bits (376), Expect = 0.0
 Identities = 413/424 (97%), Gaps = 1/424 (0%)
 Strand = Plus / Plus

                                                                       
Query: 68  tttccaatttaagcttttctcttcctttatcatcaaaaagcacttcttttcgatcaagaa 127
           |||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 127 tttccaatttaaccttttctcttcctttatcatcaaaaagcacttctgctcgatcaagaa 186

                                                                       
Query: 128 accttcgtttcattgtcaaagcaaaggcagcagaaaatagagacaatctttatcatttac 187
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 187 accttcgtttcattgtcaaagcaaaggcagcagaaaatagagacaatcttgatcatttac 246

                                                                       
Query: 188 ggaaagccaccaagcagcaccaccaccaacacccccaaaccaagaaaagaacggctcctg 247
            |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 247 agaaagccaccaagcagcagcaccatcaacacccccaaaccaagaaaagaacggctcctg 306

                                                                       
Query: 248 ttgctccagtagggctatgggacagatttcctacagctagaacagtacagcagatgatgg 307
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttgctccagttgggctatgggacagatttcctacagctagaacagtacagcagatgatgg 366

                                                                       
Query: 308 agacgatggagagaatgatggaag-acccttttgcctatacggctacttggccatcagag 366
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 367 agacgatggagagaatgatggaagcacccttttgtctatacggctacttggccatcagag 426

                                                                       
Query: 367 ccaccatcaccagttgaacgaagtgggtatagcagaggaaggactccatgggagataaaa 426
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ccaccttcaccagttgaacgaagtgggtatagcagaggaaggactccatgggagataaaa 486

                                                                       
Query: 427 gaaggagaaacagagtacaagatgagatttgacatgcctggaatgactaaagaagatgtg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gaaggagaaacagagtacaagatgagatttgacatgcctggaatgactaaagaagatgtg 546

               
Query: 487 aagg 490
           ||||
Sbjct: 547 aagg 550



 Score = 97.6 bits (49), Expect = 2e-20
 Identities = 52/53 (98%)
 Strand = Plus / Plus

                                                                
Query: 485 tgaaggcagagaaggtgcccgagaaaaataatgtcaatggtgcacaaaatgga 537
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgaaagcagagaaggtgcccgagaaaaataatgtcaatggtgcacaaaatgga 630