Jatropha Genome Database
- JcCA0254771.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0254771.20 + phase: 0
(300 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|254029187|gb|GR716936.1|GR716936 JcrRL_ASE0005 Salinity toler... 125 3e-29
gi|254029188|gb|GR716937.1|GR716937 JcrRL_ASE0006 Salinity toler... 125 3e-29
gi|268520690|gb|FM889448.1|FM889448 FM889448 Jatropha curcas emb... 125 3e-29
gi|268523873|gb|FM890559.1|FM890559 FM890559 Jatropha curcas emb... 125 3e-29
>gi|254029187|gb|GR716936.1|GR716936 JcrRL_ASE0005 Salinity
tolerance responsive genes from Jatropha curcas root
cDNA Jatropha curcas cDNA, mRNA sequence
Length = 521
Score = 125 bits (63), Expect = 3e-29
Identities = 108/123 (87%)
Strand = Plus / Plus
Query: 178 agggcatgtgggacttgctgtgcacgctgcaactgtgttccgccgggaacttccggcaac 237
|||||||| ||||| |||||||| || ||||| |||||||||||||||||| |||| |||
Sbjct: 222 agggcatgcgggacatgctgtgcccgttgcaagtgtgttccgccgggaactgccggtaac 281
Query: 238 catgaggtctgcccctgctacgctagcttgactactcacggtggtcggcgcaagtgtcct 297
|||||| ||||||||| ||||| ||||||||||| || ||||| || ||||||||||||
Sbjct: 282 tatgaggcctgcccctgttacgccagcttgactacccatggtggccgacgcaagtgtcct 341
Query: 298 tga 300
|||
Sbjct: 342 tga 344
>gi|254029188|gb|GR716937.1|GR716937 JcrRL_ASE0006 Salinity
tolerance responsive genes from Jatropha curcas root
cDNA Jatropha curcas cDNA, mRNA sequence
Length = 481
Score = 125 bits (63), Expect = 3e-29
Identities = 108/123 (87%)
Strand = Plus / Plus
Query: 178 agggcatgtgggacttgctgtgcacgctgcaactgtgttccgccgggaacttccggcaac 237
|||||||| ||||| |||||||| || ||||| |||||||||||||||||| |||| |||
Sbjct: 208 agggcatgcgggacatgctgtgcccgttgcaagtgtgttccgccgggaactgccggtaac 267
Query: 238 catgaggtctgcccctgctacgctagcttgactactcacggtggtcggcgcaagtgtcct 297
|||||| ||||||||| ||||| ||||||||||| || ||||| || ||||||||||||
Sbjct: 268 tatgaggcctgcccctgttacgccagcttgactacccatggtggccgacgcaagtgtcct 327
Query: 298 tga 300
|||
Sbjct: 328 tga 330
>gi|268520690|gb|FM889448.1|FM889448 FM889448 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003117,
mRNA sequence
Length = 427
Score = 125 bits (63), Expect = 3e-29
Identities = 108/123 (87%)
Strand = Plus / Plus
Query: 178 agggcatgtgggacttgctgtgcacgctgcaactgtgttccgccgggaacttccggcaac 237
|||||||| ||||| |||||||| || ||||| |||||||||||||||||| |||| |||
Sbjct: 126 agggcatgcgggacatgctgtgcccgttgcaagtgtgttccgccgggaactgccggtaac 185
Query: 238 catgaggtctgcccctgctacgctagcttgactactcacggtggtcggcgcaagtgtcct 297
|||||| ||||||||| ||||| ||||||||||| || ||||| || ||||||||||||
Sbjct: 186 tatgaggcctgcccctgttacgccagcttgactacccatggtggccgacgcaagtgtcct 245
Query: 298 tga 300
|||
Sbjct: 246 tga 248
>gi|268523873|gb|FM890559.1|FM890559 FM890559 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000445,
mRNA sequence
Length = 480
Score = 125 bits (63), Expect = 3e-29
Identities = 108/123 (87%)
Strand = Plus / Plus
Query: 178 agggcatgtgggacttgctgtgcacgctgcaactgtgttccgccgggaacttccggcaac 237
|||||||| ||||| |||||||| || ||||| |||||||||||||||||| |||| |||
Sbjct: 209 agggcatgcgggacatgctgtgcccgttgcaagtgtgttccgccgggaactgccggtaac 268
Query: 238 catgaggtctgcccctgctacgctagcttgactactcacggtggtcggcgcaagtgtcct 297
|||||| ||||||||| ||||| ||||||||||| || ||||| || ||||||||||||
Sbjct: 269 tatgaggcctgcccctgttacgccagcttgactacccatggtggccgacgcaagtgtcct 328
Query: 298 tga 300
|||
Sbjct: 329 tga 331