Jatropha Genome Database
- JcCA0251901.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0251901.10 + phase: 0
(1164 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268520465|gb|FM890313.1|FM890313 FM890313 Jatropha curcas emb... 803 0.0
gi|268520648|gb|FM889406.1|FM889406 FM889406 Jatropha curcas emb... 799 0.0
gi|268523840|gb|FM890526.1|FM890526 FM890526 Jatropha curcas emb... 771 0.0
gi|268523896|gb|FM890582.1|FM890582 FM890582 Jatropha curcas emb... 367 e-101
gi|268519537|gb|FM888004.1|FM888004 FM888004 Jatropha curcas emb... 92 2e-18
gi|268526429|gb|FM895283.1|FM895283 FM895283 Jatropha curcas emb... 68 2e-11
>gi|268520465|gb|FM890313.1|FM890313 FM890313 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004145,
mRNA sequence
Length = 405
Score = 803 bits (405), Expect = 0.0
Identities = 405/405 (100%)
Strand = Plus / Plus
Query: 591 cttagccttcaatgtctctggacgaccttataatcggtttgcttgtcactttgatccttc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttagccttcaatgtctctggacgaccttataatcggtttgcttgtcactttgatccttc 60
Query: 651 tggacctatatattctgatagagaaaggcttcagatttacatttctgacattgggatttt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggacctatatattctgatagagaaaggcttcagatttacatttctgacattgggatttt 120
Query: 711 cgctgcaacttatgtgctctatcagattgccatggcaaaagggttagcttggctgatatc 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgctgcaacttatgtgctctatcagattgccatggcaaaagggttagcttggctgatatc 180
Query: 771 tatttatgggataccattgcttattgttaatgcttttcttgtgacaatcacatatttgca 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatttatgggataccattgcttattgttaatgcttttcttgtgacaatcacatatttgca 240
Query: 831 gcacactcaccctgcattgccacactatgactcgtccgaatgggattggctccggggagc 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcacactcaccctgcattgccacactatgactcgtccgaatgggattggctccggggagc 300
Query: 891 tttgtcgacagtggatagagattatggggtgttgaataaggttttccataatattacaga 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttgtcgacagtggatagagattatggggtgttgaataaggttttccataatattacaga 360
Query: 951 cactcatgtaacccaccatctcttctctacaatgcctcattatca 995
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cactcatgtaacccaccatctcttctctacaatgcctcattatca 405
>gi|268520648|gb|FM889406.1|FM889406 FM889406 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003067,
mRNA sequence
Length = 497
Score = 799 bits (403), Expect = 0.0
Identities = 410/411 (99%), Gaps = 1/411 (0%)
Strand = Plus / Plus
Query: 1 atgggagccggtggccaaaaaactgctgtcctcgtcagcagtaagttcaaggaaatggaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 88 atgggagccggtggccaaaaaactgctgtcctcgtcagcagtaagt-caaggaaatggaa 146
Query: 61 accaacagacgcctgaagcgagttccacacacaaaacctccattcactcttggccaaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 accaacagacgcctgaagcgagttccacacacaaaacctccattcactcttggccaaatc 206
Query: 121 aaacaagccatcccatcccattgctttaaacgctcccttctccgctctttctcctacctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aaacaagccatcccatcccattgctttaaacgctcccttctccgctctttctcctacctt 266
Query: 181 gtttatgacctctctttaagctctctcttctactacattgccgctagctacttccatctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtttatgacctctctttaagctctctcttctactacattgccgctagctacttccatctt 326
Query: 241 ctcccttctccgatctcctacattgcttggcccatctactggactctccagggctgcact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctcccttctccgatctcctacattgcttggcccatctactggactctccagggctgcact 386
Query: 301 ctcactggtgtttgggtcattgctcatgaatgcggccaccatgcttttagtgactatcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctcactggtgtttgggtcattgctcatgaatgcggccaccatgcttttagtgactatcaa 446
Query: 361 tgggttgatgacactgttggcctaattctccactcttcacttcttgttcct 411
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgggttgatgacactgttggcctaattctccactcttcacttcttgttcct 497
>gi|268523840|gb|FM890526.1|FM890526 FM890526 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000403,
mRNA sequence
Length = 424
Score = 771 bits (389), Expect = 0.0
Identities = 414/420 (98%), Gaps = 3/420 (0%)
Strand = Plus / Plus
Query: 590 acttagccttcaatgtctctggacgaccttataatcggtttgcttgtcactttgatcctt 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 acttagccttcaatgtctctggacgaccttataatcggtttgcttgtcactttgatcctt 64
Query: 650 ctggacctatatattctgatagagaaaggcttcagatttacatttctgacattgggattt 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ctggacctatatattctgatagagaaaggcttcagatttacatttctgacattgggattt 124
Query: 710 tcgctgcaacttatgtgctctatcagattgccatggcaaaagggttagcttggctgatat 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tcgctgcaacttatgtgctctatcagattgccatggcaaaagggttagcttggctgatat 184
Query: 770 ctatttatgggataccattgcttattgttaatgcttttcttgtgacaatcacatatttgc 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ctatttatgggataccattgcttattgttaatgcttttcttgtgacaatcacatatttgc 244
Query: 830 agcacactcaccctgcattgccacactatgactcgtccgaatgggattggctccggggag 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agcacactcaccctgcattgccacactatgactcgtccgaatgggattggctccggggag 304
Query: 890 ctttgtcgacagtggatagagattatggggtgttgaataaggttttcca-taatatta-- 946
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 305 ctttgtcgacagtggatagagattatggggtgttgaataaggttttccagtaatattaac 364
Query: 947 cagacactcatgtaacccaccatctcttctctacaatgcctcattatcatgcaatggagg 1006
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 365 aagacactcatgtaaaccaccatctcttctctacaatgcctcattatcatgccatggagg 424
>gi|268523896|gb|FM890582.1|FM890582 FM890582 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000471,
mRNA sequence
Length = 353
Score = 367 bits (185), Expect = e-101
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 980 caatgcctcattatcatgcaatggaggccactaaagcaatcaagcctatattgggcgagt 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 caatgcctcattatcatgcaatggaggccactaaagcaatcaagcctatattgggcgagt 64
Query: 1040 attatcagtttgatggcactccgattcttatggcgctctggagggaggccaaggagtgcc 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 attatcagtttgatggcactccgattcttatggcgctctggagggaggccaaggagtgcc 124
Query: 1100 tgtttgtcgagccagaagagggaggtcccaaccgaggagttctctggtatggaaataagt 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tgtttgtcgagccagaagagggaggtcccaaccgaggagttctctggtatggaaataagt 184
Query: 1160 attaa 1164
|||||
Sbjct: 185 attaa 189
>gi|268519537|gb|FM888004.1|FM888004 FM888004 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001312,
mRNA sequence
Length = 347
Score = 91.7 bits (46), Expect = 2e-18
Identities = 133/162 (82%)
Strand = Plus / Plus
Query: 301 ctcactggtgtttgggtcattgctcatgaatgcggccaccatgcttttagtgactatcaa 360
|||||||| ||||||| || || ||||| || || || ||||| |||||||||||||||
Sbjct: 185 ctcactggcatttgggttatagcacatgagtgtgggcatcatgcctttagtgactatcaa 244
Query: 361 tgggttgatgacactgttggcctaattctccactcttcacttcttgttccttatttttca 420
||| ||||||||| |||||||| | ||||| || | || ||||| ||||| ||||||
Sbjct: 245 tggcttgatgacatagttggccttctcctccattcctgtctccttgtcccttacttttca 304
Query: 421 tggaaaattagccatcgtcgccatcactccaacaccggttcc 462
|||||| |||||| || || |||||||| ||||||||||||
Sbjct: 305 tggaaacatagccaccgccgtcatcactctaacaccggttcc 346
>gi|268526429|gb|FM895283.1|FM895283 FM895283 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002083,
mRNA sequence
Length = 504
Score = 67.9 bits (34), Expect = 2e-11
Identities = 103/126 (81%)
Strand = Plus / Plus
Query: 301 ctcactggtgtttgggtcattgctcatgaatgcggccaccatgcttttagtgactatcaa 360
|||||||| ||||||| || || ||||| || || || ||||| |||||||||||||||
Sbjct: 360 ctcactggcatttgggttatagcacatgagtgtgggcatcatgcctttagtgactatcaa 419
Query: 361 tgggttgatgacactgttggcctaattctccactcttcacttcttgttccttatttttca 420
||| ||||||||| |||||||| | ||||| || | || ||||| ||||| ||||||
Sbjct: 420 tggcttgatgacatagttggccttctcctccattcctgtctccttgtcccttacttttca 479
Query: 421 tggaaa 426
||||||
Sbjct: 480 tggaaa 485