Jatropha Genome Database
- JcCA0241941.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0241941.10 + phase: 1 /TE/partial
(2790 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas emb... 476 e-134
gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas emb... 313 6e-85
gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas emb... 240 7e-63
>gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001895,
mRNA sequence
Length = 495
Score = 476 bits (240), Expect = e-134
Identities = 442/512 (86%), Gaps = 23/512 (4%)
Strand = Plus / Plus
Query: 1868 gtttttgctctatgtggttgatatgttgattgttggtcagaattctgtcagaattaatag 1927
|||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 1 gtttttgctctatgtggttgatatattgattgttggtcagaattct------------ag 48
Query: 1928 cttgaagaaacagctaagtaagtcttttgttttgaaagacttgggaccagcaaagcagat 1987
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct: 49 cttgaagaaacagctaagtaagtcttttgctatgaaagacttgggaccagcaaagcaaat 108
Query: 1988 tcttggcatgaagattacaagggatcgaagagccaagaaattattattgtcacaggagaa 2047
||||||||| ||||| | ||||||||||||||||| ||||||||||||||
Sbjct: 109 tcttggcataaagatca----------aagagccaagaaattatggttgtcacaggagaa 158
Query: 2048 gtacattgtgaaagtacttcaaaggtttagaatggggaacgcaaaagcgattagttgtcc 2107
|||||||| |||||||||||||||||||||||||| ||||| ||||| |||||| |||
Sbjct: 159 gtacattgagaaagtacttcaaaggtttagaatggaaaacgctaaagctgttagttatcc 218
Query: 2108 tcttactaatcactttaaattaagttctaaacagtgcccttctaccgatggagagaagga 2167
||||| |||| |||||||||| ||||||||| |||| ||||||| ||||||||||||||
Sbjct: 219 tcttaataataactttaaattgagttctaaatagtgtccttctagggatggagagaagga 278
Query: 2168 agaaaaggaaaaggttttataagcttcagcagttggaaacttgatgtatgccatggtttg 2227
||||||||||||| || ||| ||||||||||||| || ||||||| || |||| ||||
Sbjct: 279 agaaaaggaaaagattccatatgcttcagcagttgaaagcttgatgaatatcatgatttg 338
Query: 2228 tacactgccagatattgctcactcagttggagtagtgagtcagtttctttcaaatcttgg 2287
||||| || ||||||||||||||||||| |||||||||||| |||||||||||||| | |
Sbjct: 339 tacacagctagatattgctcactcagttagagtagtgagtcggtttctttcaaatcctag 398
Query: 2288 aaaggaatattggactgcagtgaaatggattttcaggatatccaatcacatttgtagggg 2347
|||| || ||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct: 399 aaagaaacattggactgcagtgaaatggattttcatgatatccaatcacatttgca-ggg 457
Query: 2348 gagtcgtgtcgtggcagtcaagattactgaag 2379
||| |||||||| ||||| ||||||| ||||
Sbjct: 458 gagccgtgtcgtagcagttcagattacagaag 489
>gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003537,
mRNA sequence
Length = 557
Score = 313 bits (158), Expect = 6e-85
Identities = 339/399 (84%), Gaps = 9/399 (2%)
Strand = Plus / Plus
Query: 629 gcaactgaatagtttggctgagaggatggatagaactttgatggagagagtcagatgttt 688
||||||||| | |||||||||||||||| | ||||||||||||||||||||||||||| |
Sbjct: 157 gcaactgaacaatttggctgagaggatgaacagaactttgatggagagagtcagatgtgt 216
Query: 689 actctcacattcaaagttatctaaaagattttggggtgaagctcctcttacaatagtt-- 746
|||||||||| ||||||| ||||| |||||||||||| ||||| |||||| |||||
Sbjct: 217 actctcacatgcaaagttgtctaagagattttggggtaaagctttacttacagtagttta 276
Query: 747 -----caccttgtgttccgctacagtatgatactccagag--agagtatggtcaagaaag 799
|||| ||| | || ||||||||||||||||||||| |||||||||| | ||||
Sbjct: 277 tcgttcaccctgtttccctctacagtatgatactccagagagagagtatggttaggaaat 336
Query: 800 gatgtttcctatgatcatttgcgggtgtttggttgcaaagcctttgtgcttatcccgaag 859
||||| ||||||||||||||||||||||||| ||| |||||||| || | | ||| ||||
Sbjct: 337 gatgtatcctatgatcatttgcgggtgtttgattgtaaagccttcgtacatgtcctgaag 396
Query: 860 gatgaacggtctaagcttgatgccaagactagacagtgtctattcattggttataaccaa 919
||||||||||| |||||||||| |||||||||||||| |||||||||||||| || |
Sbjct: 397 gatgaacggtcgaagcttgatgttcagactagacagtgtgtattcattggttatggccca 456
Query: 920 aaccaatttagatataagtttaatgacccaatccagaagacgactatcagaaattttgat 979
|||||||| | ||||||||| |||||||||||| ||||| | ||| |||||| |||
Sbjct: 457 gaccaatttggctataagttttatgacccaatcccaaagacaattataagaaatcgtgaa 516
Query: 980 gctgtatttgttgaagatcagactattgaagatattgaa 1018
| ||||||||||||| || ||||||||||||||||||||
Sbjct: 517 gttgtatttgttgaaaattagactattgaagatattgaa 555
>gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002587,
mRNA sequence
Length = 563
Score = 240 bits (121), Expect = 7e-63
Identities = 277/330 (83%), Gaps = 18/330 (5%)
Strand = Plus / Plus
Query: 598 ttcgacatcaaacaacacctcccaagatgctgcaactgaatagtttggctgagaggatgg 657
||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct: 228 ttcgacatcaaacaacacctcccaagacgccgcaactgaatggtttggctgagaggatga 287
Query: 658 atagaactttgatggagagagtcagatgtttactctcacattcaaagttatctaaaagat 717
||||||||| | ||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct: 288 atagaacttaaacggagagagtcagatgtttattctcacatgtaaagttgtctaaaagat 347
Query: 718 ttt-ggggtgaagctcctcttac----------------aatagttcaccttgtgttccg 760
||| |||||||||||| |||||| ||| ||||||||||||||||
Sbjct: 348 tttgggggtgaagctcttcttacagcagttcatcttataaatcgttcaccttgtgttcct 407
Query: 761 ctacagtatgatactccagagagagtatggtcaagaaaggatgtttcctatgatcatttg 820
|| |||||||||| |||| | |||||||||||| ||||| |||||||||||||| | |||
Sbjct: 408 cttcagtatgataatccacaaagagtatggtcaggaaagaatgtttcctatgattacttg 467
Query: 821 cgggtgtttggttgcaaa-gcctttgtgcttatcccgaaggatgaacggtctaagcttga 879
| ||||| |||||||||| || ||||||| ||| || |||||||| |||||||||||||
Sbjct: 468 caggtgtatggttgcaaaggcatttgtgcatattcctaaggatgagaggtctaagcttga 527
Query: 880 tgccaagactagacagtgtctattcattgg 909
|| ||| ||| |||| ||| ||||||||||
Sbjct: 528 tgtcaaaactcgacaatgtgtattcattgg 557
Score = 63.9 bits (32), Expect = 9e-10
Identities = 48/52 (92%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 2646 tggctaacgtccccatttgagtgtgcagggggagatttgtt-gtggtggtgt 2696
||||| ||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct: 86 tggctgacgtccccacttgagcgtgcagggggagatttgttggtggtggtgt 35