Jatropha Genome Database
- JcCA0240711.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0240711.10 - phase: 0 /partial
(378 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|262090950|gb|GT229308.1|GT229308 JC873 Jatropha seeds from fr... 165 4e-41
gi|268524695|gb|FM895393.1|FM895393 FM895393 Jatropha curcas emb... 165 4e-41
gi|237680381|gb|GO246593.1|GO246593 JcrME_RL0137 Expressed seque... 155 4e-38
gi|268520394|gb|FM890242.1|FM890242 FM890242 Jatropha curcas emb... 48 7e-06
>gi|262090950|gb|GT229308.1|GT229308 JC873 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL21SE.D01.scf 5', mRNA sequence
Length = 585
Score = 165 bits (83), Expect = 4e-41
Identities = 284/351 (80%)
Strand = Plus / Plus
Query: 28 gtcactggcgctgctgggcaaataggctatgctattgttccaatgattgctagaggagtc 87
|||||||| ||||| || ||||| || ||||| |||| || ||||||||||| ||||||
Sbjct: 150 gtcactggggctgcaggacaaattggatatgcgcttgtccccatgattgctaggggagtc 209
Query: 88 atgctaggccctgatcaacctgtaattctgcacatgcttgatattgaacctgcagctgag 147
||||| || |||| |||||||| || || ||| |||||||||| ||||||||| |||
Sbjct: 210 atgcttggtactgaccaacctgtcatcctccacttgcttgatatcccacctgcagcagag 269
Query: 148 gccttgaacggggtgaaaatggaaatgatagatgcagcctttcctctgctaaaaggagtt 207
|| ||||| || ||||| ||||| || | |||||||| |||||||| || ||||| |||
Sbjct: 270 gcattgaatggtgtgaagatggagttggttgatgcagcttttcctcttcttaaaggtgtt 329
Query: 208 attgctactactgatgttgttgaagcatgcatgggagtcaatgttgcggttatggttggt 267
||||||| ||||| |||||||| || |||| || || || |||| || |||||||||
Sbjct: 330 gttgctacaactgacgttgttgaggcttgcactggggtaaacattgctgtcatggttggt 389
Query: 268 gggtttccacgaaaagaaggtatggagagaaaggatgtgatgtctaaaaatgtatctatt 327
|| || || | |||||||| ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 390 ggcttccctaggaaagaaggaatggagagaaaagatgtgatgtcaaaaaatgtgtcaatc 449
Query: 328 tacaaggctcaggcttcagcattggagaagcatgctgctgcagattgcaag 378
|||||| | |||||||| || | ||||||||||| |||||| | ||||||
Sbjct: 450 tacaagtcccaggcttctgccctagagaagcatgcagctgcaaactgcaag 500
>gi|268524695|gb|FM895393.1|FM895393 FM895393 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002309,
mRNA sequence
Length = 628
Score = 165 bits (83), Expect = 4e-41
Identities = 284/351 (80%)
Strand = Plus / Plus
Query: 28 gtcactggcgctgctgggcaaataggctatgctattgttccaatgattgctagaggagtc 87
|||||||| ||||| || ||||| || ||||| |||| || ||||||||||| ||||||
Sbjct: 89 gtcactggggctgcaggacaaattggatatgcgcttgtccccatgattgctaggggagtc 148
Query: 88 atgctaggccctgatcaacctgtaattctgcacatgcttgatattgaacctgcagctgag 147
||||| || |||| |||||||| || || ||| |||||||||| ||||||||| |||
Sbjct: 149 atgcttggtactgaccaacctgtcatcctccacttgcttgatatcccacctgcagcagag 208
Query: 148 gccttgaacggggtgaaaatggaaatgatagatgcagcctttcctctgctaaaaggagtt 207
|| ||||| || ||||| ||||| || | |||||||| |||||||| || ||||| |||
Sbjct: 209 gcattgaatggtgtgaagatggagttggttgatgcagcttttcctcttcttaaaggtgtt 268
Query: 208 attgctactactgatgttgttgaagcatgcatgggagtcaatgttgcggttatggttggt 267
||||||| ||||| |||||||| || |||| || || || |||| || |||||||||
Sbjct: 269 gttgctacaactgacgttgttgaggcttgcactggggtaaacattgctgtcatggttggt 328
Query: 268 gggtttccacgaaaagaaggtatggagagaaaggatgtgatgtctaaaaatgtatctatt 327
|| || || | |||||||| ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 329 ggcttccctaggaaagaaggaatggagagaaaagatgtgatgtcaaaaaatgtgtcaatc 388
Query: 328 tacaaggctcaggcttcagcattggagaagcatgctgctgcagattgcaag 378
|||||| | |||||||| || | ||||||||||| |||||| | ||||||
Sbjct: 389 tacaagtcccaggcttctgccctagagaagcatgcagctgcaaactgcaag 439
>gi|237680381|gb|GO246593.1|GO246593 JcrME_RL0137 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 650
Score = 155 bits (78), Expect = 4e-38
Identities = 270/334 (80%)
Strand = Plus / Plus
Query: 28 gtcactggcgctgctgggcaaataggctatgctattgttccaatgattgctagaggagtc 87
|||||||| ||||| || ||||| || ||||| |||| || ||||||||||| ||||||
Sbjct: 175 gtcactggggctgcaggacaaattggatatgcgcttgtccccatgattgctaggggagtc 234
Query: 88 atgctaggccctgatcaacctgtaattctgcacatgcttgatattgaacctgcagctgag 147
||||| || |||| |||||||| || || ||| |||||||||| ||||||||| |||
Sbjct: 235 atgcttggtactgaccaacctgtcatcctccacttgcttgatatcccacctgcagcagag 294
Query: 148 gccttgaacggggtgaaaatggaaatgatagatgcagcctttcctctgctaaaaggagtt 207
|| ||||| || ||||| ||||| || | |||||||| |||||||| || ||||| |||
Sbjct: 295 gcattgaatggtgtgaagatggagttggttgatgcagcttttcctcttcttaaaggtgtt 354
Query: 208 attgctactactgatgttgttgaagcatgcatgggagtcaatgttgcggttatggttggt 267
||||||| ||||| |||||||| || |||| || || || |||| || |||||||||
Sbjct: 355 gttgctacaactgacgttgttgaggcttgcactggggtaaacattgctgtcatggttggt 414
Query: 268 gggtttccacgaaaagaaggtatggagagaaaggatgtgatgtctaaaaatgtatctatt 327
|| || || | |||||||| ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 415 ggcttccctaggaaagaaggaatggagagaaaagatgtgatgtcaaaaaatgtgtcaatc 474
Query: 328 tacaaggctcaggcttcagcattggagaagcatg 361
|||||| | |||||||| || | ||||||||||
Sbjct: 475 tacaagtcccaggcttctgccctagagaagcatg 508
>gi|268520394|gb|FM890242.1|FM890242 FM890242 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004058,
mRNA sequence
Length = 177
Score = 48.1 bits (24), Expect = 7e-06
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 28 gtcactggcgctgctgggcaaataggctatgctattgttccaatgattgctagaggagtc 87
|||||||| ||||| || ||||| || ||||| |||| || ||||||||||| ||||||
Sbjct: 56 gtcactggggctgcaggacaaattggatatgcgcttgtccccatgattgctaggggagtc 115
Query: 88 atgc 91
||||
Sbjct: 116 atgc 119