Jatropha Genome Database

JcCA0214011.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0214011.10 + phase: 0 /partial
         (1245 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268521251|gb|FM891970.1|FM891970 FM891970 Jatropha curcas emb...   815   0.0  

>gi|268521251|gb|FM891970.1|FM891970 FM891970 Jatropha curcas embryo
            56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002404,
            mRNA sequence
          Length = 514

 Score =  815 bits (411), Expect = 0.0
 Identities = 487/511 (95%), Gaps = 1/511 (0%)
 Strand = Plus / Plus

                                                                        
Query: 643  tttgctgaaacagaaaatgatgagactgaaggaagatcccagagaacagcttatgctaaa 702
            |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    tttgatgaaacaggaaatgatgagactgaaggaagatcccagagaacagcttatgctaaa 60

                                                                        
Query: 703  gaaactttcaaggaactggtgagagcatactttgtagaagcaaagtggtttaatgagggt 762
            |||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 61   gaaactttcaaggaataggtgagcgcatactttgtagaagcaaagtggtttaatgagggg 120

                                                                        
Query: 763  tatgtgccacctttcgaggaatacataagcaatggattagtgtcgagcacttatagtgta 822
            ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 121  tatgtgccaccattcgaggagtacataagcaatggattagtgtcgagcacttacagtgta 180

                                                                        
Query: 823  cttccagcagcttcctttattggattggaaaaggttgttggaagcaaagagtacgaatgg 882
            |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 181  cttccagcagcttcctttattggaatggaaaacgttgttggaagcaaagagtacgaatgg 240

                                                                        
Query: 883  gtaaaagaaaatcctaaaattgttaatgcttccaagttaatttcccgtctgatggatgac 942
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 241  gtaaaagaaaatcctaaaattgttaatgcttccaagttaatttgccgtctgatggatgac 300

                                                                        
Query: 943  gtaacaacccatgagcatgagcaagagagagaacactgtgcttcaggtatcgaatgctac 1002
            ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 301  gtaacaacccacgagcatgagcaagagagaggacactgtgcttcaggtatcgaatgctac 360

                                                                        
Query: 1003 atgaaagagtatggtgtttcacaaaaagaggccattgatgagatccagaaaatg-tgtgc 1061
            |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct: 361  atgaaagagtatggtgtttcacaaaaggtggccattgatgagatccagaaaatgttgtgc 420

                                                                        
Query: 1062 aaatgcttggaaggatatcaaccaagcatgcatgaagccaactgaggtatccaccactct 1121
            |||||| ||||||||||| ||| ||||||||||||||||||||||||| |||||||  ||
Sbjct: 421  aaatgcctggaaggatatgaacgaagcatgcatgaagccaactgaggtgtccaccaacct 480

                                           
Query: 1122 tctcaagtattatgtcaatcttgcacgtgtc 1152
            ||||| |||||||||||||||||||||||||
Sbjct: 481  tctcacgtattatgtcaatcttgcacgtgtc 511