Jatropha Genome Database

JcCA0207521.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0207521.20 + phase: 1 /TE/partial
         (1345 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268519991|gb|FM889839.1|FM889839 FM889839 Jatropha curcas emb...    74   5e-13

>gi|268519991|gb|FM889839.1|FM889839 FM889839 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003577,
           mRNA sequence
          Length = 505

 Score = 73.8 bits (37), Expect = 5e-13
 Identities = 112/137 (81%)
 Strand = Plus / Plus

                                                                       
Query: 180 acagatccgggttttaacaaatggaaatccgagaattctcttattatgtcttggttaata 239
           |||||| | ||||| |||||||||||||| || | |||| |||||||||||||||| |||
Sbjct: 343 acagattcaggtttcaacaaatggaaatctgaaagttcttttattatgtcttggttgata 402

                                                                       
Query: 240 aattctatgcagccaactatttcccgaggatatttgcttcttgatacagctaagaagata 299
           || || ||||| |||  |||| | |   | |||||||||||||| || || || ||||||
Sbjct: 403 aactcaatgcaaccagttattgcgcatagttatttgcttcttgacactgcaaaaaagata 462

                            
Query: 300 tgggatgctgcttcaca 316
           ||||||||  |||||||
Sbjct: 463 tgggatgcaacttcaca 479