Jatropha Genome Database
- JcCA0200941.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0200941.10 + phase: 0 /partial
(407 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237680294|gb|GO246478.1|GO246478 JcrME_RL0022 Expressed seque... 333 9e-92
gi|268521615|gb|FM896823.1|FM896823 FM896823 Jatropha curcas emb... 303 8e-83
gi|268522806|gb|FM896249.1|FM896249 FM896249 Jatropha curcas emb... 291 3e-79
gi|237680911|gb|GO247102.1|GO247102 JcrME_RL0646 Expressed seque... 281 3e-76
gi|268524359|gb|FM895039.1|FM895039 FM895039 Jatropha curcas emb... 246 2e-65
gi|268520846|gb|FM889604.1|FM889604 FM889604 Jatropha curcas emb... 232 2e-61
gi|268519294|gb|FM887761.1|FM887761 FM887761 Jatropha curcas emb... 198 3e-51
gi|268519587|gb|FM888054.1|FM888054 FM888054 Jatropha curcas emb... 100 2e-21
>gi|237680294|gb|GO246478.1|GO246478 JcrME_RL0022 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 713
Score = 333 bits (168), Expect = 9e-92
Identities = 345/404 (85%)
Strand = Plus / Plus
Query: 1 atggagaccttcctattcacttcggaatcggtgaacgagggacaccccgacaagctctgc 60
||||||||||||||||||||||| ||||| || |||||||| || ||||||||||| |||
Sbjct: 127 atggagaccttcctattcacttccgaatctgttaacgagggccatcccgacaagctttgc 186
Query: 61 gaccagatctccgatgcagtgctcgatgcttgtttggctcaggaccccgacagcaaggtg 120
|| ||| | || ||||| | ||||||||||| | | || || || |||||||||||
Sbjct: 187 gatcaggtttcagatgccatcctcgatgcttgccttgagcaagatcctgacagcaaggtt 246
Query: 121 gcttgcgaaacttgcaccaagaccaacctggtcatggtttttggagagatcaccactaaa 180
|||||||| |||||||||||||||||| |||||||||| ||||| |||||||| || |||
Sbjct: 247 gcttgcgagacttgcaccaagaccaacatggtcatggtctttggtgagatcacaaccaaa 306
Query: 181 gccaatatagactacgagaagattgtgcgcgacacttgccgttctattggattcacttcc 240
|||||| ||||||| || |||||||| || ||||| |||||||| |||||||| |||
Sbjct: 307 gccaatgtagactatgaaaagattgttcgtgacacctgccgttcaattggatttgtttct 366
Query: 241 gatgatgtgggtctcgatgctgaccattgtaaggtgcttgtcaatattgagcaacagagt 300
|||||||| ||||| ||||||||| | || ||||| || || | |||||||| |||||
Sbjct: 367 gatgatgttggtcttgatgctgacaaatgcaaggtcctagtttacattgagcagcagagc 426
Query: 301 cctgatattgctcaaggtgtccatggccatctcactaagcgccctgaggaaattggtgct 360
|||||||||||||| ||||||||||||||||| || ||||| |||||||| |||||||||
Sbjct: 427 cctgatattgctcagggtgtccatggccatcttaccaagcggcctgaggagattggtgct 486
Query: 361 ggtgaccaaggtcacatgtttggctatgctactgatgagacccc 404
||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 487 ggtgaccaaggtcacatgtttggttatgccactgatgaaacccc 530
>gi|268521615|gb|FM896823.1|FM896823 FM896823 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004228,
mRNA sequence
Length = 471
Score = 303 bits (153), Expect = 8e-83
Identities = 321/377 (85%)
Strand = Plus / Plus
Query: 1 atggagaccttcctattcacttcggaatcggtgaacgagggacaccccgacaagctctgc 60
||||||||||||||||||||||| ||||| || |||||||| || ||||||||||| |||
Sbjct: 95 atggagaccttcctattcacttccgaatctgttaacgagggccatcccgacaagctttgc 154
Query: 61 gaccagatctccgatgcagtgctcgatgcttgtttggctcaggaccccgacagcaaggtg 120
|| ||| | || ||||| | ||||||||||| | | || || || |||||||||||
Sbjct: 155 gatcaggtttcagatgccatcctcgatgcttgccttgagcaagatcctgacagcaaggtt 214
Query: 121 gcttgcgaaacttgcaccaagaccaacctggtcatggtttttggagagatcaccactaaa 180
|||||||| |||||||||||||||||| |||||||||| ||||| |||||||| || |||
Sbjct: 215 gcttgcgagacttgcaccaagaccaacatggtcatggtctttggtgagatcacaaccaaa 274
Query: 181 gccaatatagactacgagaagattgtgcgcgacacttgccgttctattggattcacttcc 240
|||||| ||||||| || |||||||| || ||||| |||||||| |||||||| |||
Sbjct: 275 gccaatgtagactatgaaaagattgttcgtgacacctgccgttcaattggatttgtttct 334
Query: 241 gatgatgtgggtctcgatgctgaccattgtaaggtgcttgtcaatattgagcaacagagt 300
|||||||| ||||| ||||||||| | || ||||| || || | |||||||| |||||
Sbjct: 335 gatgatgttggtcttgatgctgacaaatgcaaggtcctagtttacattgagcagcagagc 394
Query: 301 cctgatattgctcaaggtgtccatggccatctcactaagcgccctgaggaaattggtgct 360
|||||||||||||| ||||||||||||||||| || ||||| |||||||| |||||||||
Sbjct: 395 cctgatattgctcagggtgtccatggccatcttaccaagcggcctgaggagattggtgct 454
Query: 361 ggtgaccaaggtcacat 377
|||||||||||||||||
Sbjct: 455 ggtgaccaaggtcacat 471
>gi|268522806|gb|FM896249.1|FM896249 FM896249 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003438,
mRNA sequence
Length = 596
Score = 291 bits (147), Expect = 3e-79
Identities = 342/407 (84%)
Strand = Plus / Plus
Query: 1 atggagaccttcctattcacttcggaatcggtgaacgagggacaccccgacaagctctgc 60
||||||||||| |||||||| || || || ||||||||||||||||||||||| |||||
Sbjct: 50 atggagacctttctattcacctctgagtccgtgaacgagggacaccccgacaaactctgt 109
Query: 61 gaccagatctccgatgcagtgctcgatgcttgtttggctcaggaccccgacagcaaggtg 120
||||||||||| ||||| || | ||||| || | | || || || |||||||||||
Sbjct: 110 gaccagatctctgatgcggtattagatgcctgccttgagcaagatcctgacagcaaggtt 169
Query: 121 gcttgcgaaacttgcaccaagaccaacctggtcatggtttttggagagatcaccactaaa 180
|| || ||||| ||||||||||||||| |||||||||| ||||||||||| ||||| |||
Sbjct: 170 gcctgtgaaacatgcaccaagaccaacatggtcatggtctttggagagattaccaccaaa 229
Query: 181 gccaatatagactacgagaagattgtgcgcgacacttgccgttctattggattcacttcc 240
||||| ||||||| |||||||| || || | || |||||| |||||||| | ||||
Sbjct: 230 gccaaggtagactatgagaagatagttcgtcagacatgccgtggaattggatttatttcc 289
Query: 241 gatgatgtgggtctcgatgctgaccattgtaaggtgcttgtcaatattgagcaacagagt 300
|||||||| ||||| ||||||||| | || ||||| ||||| || ||||||||||||||
Sbjct: 290 gatgatgttggtcttgatgctgacaaatgcaaggtccttgttaacattgagcaacagagc 349
Query: 301 cctgatattgctcaaggtgtccatggccatctcactaagcgccctgaggaaattggtgct 360
|||||||||||||| |||||||||||||| |||| |||||||| || || |||||||||
Sbjct: 350 cctgatattgctcagggtgtccatggccacttcaccaagcgcccagaagagattggtgct 409
Query: 361 ggtgaccaaggtcacatgtttggctatgctactgatgagacccctga 407
||||| || || || |||||||| ||||| |||||||||||||||||
Sbjct: 410 ggtgatcagggacatatgtttggttatgccactgatgagacccctga 456
>gi|237680911|gb|GO247102.1|GO247102 JcrME_RL0646 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 700
Score = 281 bits (142), Expect = 3e-76
Identities = 343/406 (84%), Gaps = 3/406 (0%)
Strand = Plus / Plus
Query: 1 atggagaccttcctattcacttcggaatcggtgaacgagggacaccccgacaagctctgc 60
||||||||||||||||||||||| ||||| || |||||||| || ||||||||||| |||
Sbjct: 94 atggagaccttcctattcacttccgaatctgttaacgagggccatcccgacaagctttgc 153
Query: 61 gaccagatctccgatgcagtgctcgatgcttgtttggctcaggaccccgacagcaaggtg 120
|| ||| | || ||||| | ||||||||||| | | || || || |||||||||||
Sbjct: 154 gatcaggtttcagatgccatcctcgatgcttgccttgagcaagatcctgacagcaaggtt 213
Query: 121 gcttgcgaaacttgcaccaagaccaacctggtcatggtttttggagagatcaccactaaa 180
|||||||| |||||||||||||||||| |||||||||| ||||| |||||||| || |||
Sbjct: 214 gcttgcgagacttgcaccaagaccaacatggtcatggtctttggtgagatcacaaccaaa 273
Query: 181 gccaatatagactacgagaagattgtgcgcgacacttgccgttctattggattcacttcc 240
|||||| ||||||| || ||||| || || ||||| |||||||| |||||||| |||
Sbjct: 274 gccaatgtagactatgaaaagatcgttcgtgacacctgccgttcaattggatttgtttct 333
Query: 241 gatgatgtgggtctcgatgctgaccattgtaaggtgcttgtcaatattgagcaacagagt 300
|||||||| ||||| ||||||||| | || ||||| || || | |||||||| |||||
Sbjct: 334 gatgatgttggtcttgatgctgacaaatgcaaggtcctagtttacattgagcagcagagc 393
Query: 301 cctgatattgctcaaggtgtccatggccatctcactaagcgccctgaggaaatt-ggtgc 359
|||||||||||||| ||||||||||||||||| || ||||| |||||||| ||| |||||
Sbjct: 394 cctgatattgctcagggtgtccatggccatcttaccaagcggcctgaggagattgggtgc 453
Query: 360 tggtgaccaaggtcacatgttt-ggctatgctactgatgagacccc 404
|||||||| ||||||||||||| || ||||| |||||||| |||||
Sbjct: 454 tggtgacc-aggtcacatgtttaggttatgccactgatgaaacccc 498
>gi|268524359|gb|FM895039.1|FM895039 FM895039 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001382,
mRNA sequence
Length = 433
Score = 246 bits (124), Expect = 2e-65
Identities = 280/332 (84%)
Strand = Plus / Plus
Query: 1 atggagaccttcctattcacttcggaatcggtgaacgagggacaccccgacaagctctgc 60
||||||||||||||||||||||| ||||| || |||||||| || ||||||||||| |||
Sbjct: 95 atggagaccttcctattcacttccgaatctgttaacgagggccatcccgacaagctttgc 154
Query: 61 gaccagatctccgatgcagtgctcgatgcttgtttggctcaggaccccgacagcaaggtg 120
|| ||| | || ||||| | ||||||||||| | | || || || |||||||||||
Sbjct: 155 gatcaggtttcagatgccatcctcgatgcttgccttgagcaagatcctgacagcaaggtt 214
Query: 121 gcttgcgaaacttgcaccaagaccaacctggtcatggtttttggagagatcaccactaaa 180
|||||||| |||||||||||||||||| |||||||||| ||||| |||||||| || |||
Sbjct: 215 gcttgcgagacttgcaccaagaccaacatggtcatggtctttggtgagatcacaaccaaa 274
Query: 181 gccaatatagactacgagaagattgtgcgcgacacttgccgttctattggattcacttcc 240
|||||| ||||||| || |||||||| || ||||| |||||||| |||||||| |||
Sbjct: 275 gccaatgtagactatgaaaagattgttcgtgacacctgccgttcaattggatttgtttct 334
Query: 241 gatgatgtgggtctcgatgctgaccattgtaaggtgcttgtcaatattgagcaacagagt 300
|||||||| ||||| ||||||||| | || ||||| || || | |||||||| |||||
Sbjct: 335 gatgatgttggtcttgatgctgacaaatgcaaggtcctagtttacattgagcagcagagc 394
Query: 301 cctgatattgctcaaggtgtccatggccatct 332
|||||||||||||| |||||||||||||||||
Sbjct: 395 cctgatattgctcagggtgtccatggccatct 426
>gi|268520846|gb|FM889604.1|FM889604 FM889604 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003305,
mRNA sequence
Length = 465
Score = 232 bits (117), Expect = 2e-61
Identities = 240/281 (85%)
Strand = Plus / Plus
Query: 127 gaaacttgcaccaagaccaacctggtcatggtttttggagagatcaccactaaagccaat 186
||||| ||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||
Sbjct: 16 gaaacatgcaccaagaccaacatggtcatggtctttggagagattaccaccaaagccaag 75
Query: 187 atagactacgagaagattgtgcgcgacacttgccgttctattggattcacttccgatgat 246
||||||| |||||||| || || | || |||||| |||||||| | ||||||||||
Sbjct: 76 gtagactatgagaagatagttcgtcagacatgccgtggaattggatttatttccgatgat 135
Query: 247 gtgggtctcgatgctgaccattgtaaggtgcttgtcaatattgagcaacagagtcctgat 306
|| ||||| ||||||||| | || ||||| ||||| || |||||||||||||| ||||||
Sbjct: 136 gttggtcttgatgctgacaaatgcaaggtccttgttaacattgagcaacagagccctgat 195
Query: 307 attgctcaaggtgtccatggccatctcactaagcgccctgaggaaattggtgctggtgac 366
|||||||| |||||||||||||| |||| |||||||| || || ||||||||||||||
Sbjct: 196 attgctcagggtgtccatggccacttcaccaagcgcccagaagagattggtgctggtgat 255
Query: 367 caaggtcacatgtttggctatgctactgatgagacccctga 407
|| || || |||||||| ||||| |||||||||||||||||
Sbjct: 256 cagggacatatgtttggttatgccactgatgagacccctga 296
>gi|268519294|gb|FM887761.1|FM887761 FM887761 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001024,
mRNA sequence
Length = 362
Score = 198 bits (100), Expect = 3e-51
Identities = 223/264 (84%)
Strand = Plus / Plus
Query: 1 atggagaccttcctattcacttcggaatcggtgaacgagggacaccccgacaagctctgc 60
||||||||||||||||||||||| ||||| || |||||||| || ||||||||||| |||
Sbjct: 95 atggagaccttcctattcacttccgaatctgttaacgagggccatcccgacaagctttgc 154
Query: 61 gaccagatctccgatgcagtgctcgatgcttgtttggctcaggaccccgacagcaaggtg 120
|| ||| | || ||||| || ||||||||||| | | || || || |||||||||||
Sbjct: 155 gatcaggtttcagatgccgtcctcgatgcttgccttgagcaagatcctgacagcaaggtt 214
Query: 121 gcttgcgaaacttgcaccaagaccaacctggtcatggtttttggagagatcaccactaaa 180
|||||||| |||||||||||||||||| |||||||||| ||||| |||||||| || |||
Sbjct: 215 gcttgcgagacttgcaccaagaccaacatggtcatggtctttggtgagatcacaaccaaa 274
Query: 181 gccaatatagactacgagaagattgtgcgcgacacttgccgttctattggattcacttcc 240
||| || ||||||| || |||||||| || ||||| |||||||| |||||||| |||
Sbjct: 275 gcccatgtagactatgaaaagattgttcgtgacacctgccgttcaattggatttgtttct 334
Query: 241 gatgatgtgggtctcgatgctgac 264
|||||||| ||||| |||||||||
Sbjct: 335 gatgatgttggtcttgatgctgac 358
>gi|268519587|gb|FM888054.1|FM888054 FM888054 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001370,
mRNA sequence
Length = 531
Score = 99.6 bits (50), Expect = 2e-21
Identities = 94/105 (89%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 303 tgatattgctcaaggt-gtccatgg-ccatctcactaagcgccctgaggaaattggtgct 360
|||||||||||| ||| |||||||| |||||| || ||||| |||||||| |||||||||
Sbjct: 1 tgatattgctcagggttgtccatggnccatcttaccaagcggcctgaggagattggtgct 60
Query: 361 ggtgaccaaggtcacatgtttggctatgct-actgatgagacccc 404
||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 61 ggtgaccaaggtcacatgtttggttatgcncactgatgaaacccc 105