Jatropha Genome Database

JcCA0199381.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0199381.10 + phase: 0 /pseudo/partial
         (444 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522034|gb|FM892874.1|FM892874 FM892874 Jatropha curcas emb...   842   0.0  

>gi|268522034|gb|FM892874.1|FM892874 FM892874 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003549,
           mRNA sequence
          Length = 588

 Score =  842 bits (425), Expect = 0.0
 Identities = 431/433 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   ctcataagcagtacattgcaaaacatcaacaagggccttcgcaacagtgggggaatttct 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   ctcataagcagtacattgcaaaacatcaacaagggccttcgcaacagtgggggaatttct 64

                                                                       
Query: 68  attactttaggatgaagaacataagtgacatatattttatcggaggctttggcactgttg 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  attactttaggatgaagaacataagtgacatatattttatcggaggctttggcactgttg 124

                                                                       
Query: 128 cttgggttgatgttaaggagtatgaggcccttaagcctgataaaattgcagttgatggag 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cttgggttgatgttaaggagtatgaggcccttaagcctgataaaattgcagttgatggag 184

                                                                       
Query: 188 gcgagcaaaatctcaaggaacttaatgcaatcttctcaaagccccttaaagagctcttgt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gcgagcaaaatctcaaggaacttaatgcaatcttctcaaagccccttaaagagctcttgt 244

                                                                       
Query: 248 ccaccgaagcagaaatagacgatgctgctcttatatcaatagacagcaaaggaatcgata 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ccaccgaagcagaaatagacgatgctgctcttatatcaatagacagcaaaggaatcgata 304

                                                                       
Query: 308 tccgggtccgtcaaggtgcacagttcaacatacagaggctatcatttgaagaagggcatg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tccgggtccgtcaaggtgcacagttcaacatacagaggctatcatttgaagaagggcatg 364

                                                                       
Query: 368 cggttgaaacattagaataagccaaggctgctctatggaaactaataaacaaaggctaag 427
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 365 cggttgaaacattagaagaagccaaggctgctctatggaaactaataaacaaaggccaag 424

                        
Query: 428 ttcacaatttgca 440
           |||||||||||||
Sbjct: 425 ttcacaatttgca 437