Jatropha Genome Database

JcCA0186681.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0186681.10 - phase: 1 /pseudo/partial
         (1355 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518859|gb|FM889102.1|FM889102 FM889102 Jatropha curcas emb...   252   9e-67

>gi|268518859|gb|FM889102.1|FM889102 FM889102 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002675,
            mRNA sequence
          Length = 484

 Score =  252 bits (127), Expect = 9e-67
 Identities = 139/143 (97%)
 Strand = Plus / Plus

                                                                        
Query: 930  agctgggatattagcatgaaagaccaacttccagattacatgaaggtgtattttgaagca 989
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 190  agctgggatattagcatgaaagatcaacttccagattacatgaaggtgtattttcaagca 249

                                                                        
Query: 990  ttattagatttttattctgaaatagagaaagaaacaaccaaggaaggaaggtctttctgt 1049
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 250  ttattagatttttattctgaaatagaggaagaaacaaccaaggaaggaaggtctttctgt 309

                                   
Query: 1050 attcattatgcgaaagaagcggt 1072
             ||||||||||||||||||||||
Sbjct: 310  gttcattatgcgaaagaagcggt 332



 Score =  117 bits (59), Expect = 3e-26
 Identities = 77/83 (92%)
 Strand = Plus / Plus

                                                                       
Query: 849 gctatggtgtgtgtaatggatgatatctatgatgtgcatggcacaattgaggaacttgag 908
           |||||| ||| ||||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct: 7   gctatgctgtctgtaatggatgatatttatgatgtgcatggcacatttgaagaacttgag 66

                                  
Query: 909 cttttaaccaaagtgattgaaag 931
           ||||| |||||||||||||||||
Sbjct: 67  cttttcaccaaagtgattgaaag 89