Jatropha Genome Database

JcCA0163731.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0163731.10 + phase: 2 /partial
         (1015 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268519759|gb|FM888226.1|FM888226 FM888226 Jatropha curcas emb...   113   4e-25
gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed seque...    82   1e-15

>gi|268519759|gb|FM888226.1|FM888226 FM888226 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001583,
            mRNA sequence
          Length = 258

 Score =  113 bits (57), Expect = 4e-25
 Identities = 93/105 (88%)
 Strand = Plus / Minus

                                                                        
Query: 903  actggaaatttcctaaaggaataactgcagagaatcttgacatgaccgatgcttttggag 962
            |||||||||||||||||||| |||||||||| |||||||||||||  || ||||||||||
Sbjct: 219  actggaaatttcctaaaggagtaactgcagaaaatcttgacatgaatgaagcttttggag 160

                                                         
Query: 963  gagttatgaagagaaaagttgaccttgaactgattcccattccat 1007
            ||| | | || |||||||| ||||||||| |||| ||||||||||
Sbjct: 159  gagctgtcaaaagaaaagtagaccttgaattgatccccattccat 115


>gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 619

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 197/249 (79%)
 Strand = Plus / Plus

                                                                       
Query: 481 tatagctgatgtgtttccttccttaaaatggcttccttcagtcaagagggaagagtctag 540
           ||||| |||| | ||||||||| || ||||||||||| | | ||||||||||   || ||
Sbjct: 91  tatagttgatatctttccttccctacaatggcttcctactgccaagagggaaagatcaag 150

                                                                       
Query: 541 agttttgaaattgcatcatgaaacagataagatccttgaagatatcttacaagagcataa 600
           | ||| ||||||||| ||  | |||||| |||| || |||||||||||||||||||||| 
Sbjct: 151 aatttggaaattgcaccaaaatacagatgagattctcgaagatatcttacaagagcatag 210

                                                                       
Query: 601 agcaaataagcaggcgtgggtttcggaggatggcgatgggaggaaagcagacaattttgt 660
           ||| || |  ||||||   | |||  || || | ||| ||||  |||| || ||| || |
Sbjct: 211 agctaaaagacaggcgacagcttccaagaattgggataggagcgaagctgataatcttct 270

                                                                       
Query: 661 tgatgttcttctggaccttcaacaaagtggaaatcttgattttcccttgactgacgtcac 720
           |||||||||| |||| |||||||| || |||||||||||| |||| || ||||| ||| |
Sbjct: 271 tgatgttcttttggatcttcaacagagcggaaatcttgatgttcctttaactgatgtcgc 330

                    
Query: 721 cattaaagc 729
           ||| |||||
Sbjct: 331 catcaaagc 339



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 401 aatgctattggtcataaaagcaaaaatcaagaaacgttgtta 442
           |||||| ||||||||||||||||||| |||||  ||||||||
Sbjct: 8   aatgctgttggtcataaaagcaaaaaccaagaggcgttgtta 49