Jatropha Genome Database

JcCA0155261.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0155261.40 - phase: 2 /TE/pseudo/partial
         (1968 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517507|gb|FM889218.1|FM889218 FM889218 Jatropha curcas emb...   291   2e-78

>gi|268517507|gb|FM889218.1|FM889218 FM889218 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002818,
           mRNA sequence
          Length = 542

 Score =  291 bits (147), Expect = 2e-78
 Identities = 426/514 (82%), Gaps = 5/514 (0%)
 Strand = Plus / Plus

                                                                       
Query: 356 ttagattataaactaaatgaacaaactgatattaaattctttgattggtataaattaact 415
           ||||| |||||| ||||| | |||||||| ||||| |||| ||||||||||||||||| |
Sbjct: 16  ttagaatataaaataaataatcaaactgaaattaatttctgtgattggtataaattaatt 75

                                                                       
Query: 416 aaagaaaatgaatctgataaaagtttaaatcccataactattagagataaaagaccaaaa 475
           ||||||||| ||||||| |||  |||||| || ||||| |||||||||| ||||||  ||
Sbjct: 76  aaagaaaataaatctgaaaaagatttaaaccctataacaattagagatagaagacctgaa 135

                                                                       
Query: 476 tggatagtaaatgatcaaacaataaaaagtgattttcctcctaaaacaattagtaaatta 535
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tggatagtaaatgaacaaaccataaaaagtgattttcctcctaaaacaattagtaaatta 195

                                                                       
Query: 536 aaatatcaagataatgaagtagtatgtg-caccatataaaattgctccag-aacatgatg 593
           ||||||||||| |||||| |    |||| |||| ||||||||||||| || |  ||||||
Sbjct: 196 aaatatcaagacaatgaaattaattgtgccaccttataaaattgctcaagcataatgatg 255

                                                                       
Query: 594 caaataaaaaagtaattgaacaaaataattttagtaatgctagtttaatatgtttaaata 653
            ||||||||| | ||||||||| ||||| ||||||||||| |||||||| ||||||||  
Sbjct: 256 taaataaaaaggaaattgaacagaataactttagtaatgcaagtttaatttgtttaaact 315

                                                                       
Query: 654 cacaattaaaaaggattgaaaacttattagaagataaaacacaagtaaatgaacaacaag 713
           | ||||||||| | || ||| |  |  | ||||||||| |   ||| |  ||| || |  
Sbjct: 316 cgcaattaaaacgcatagaacatatgcttgaagataaacctttagttatagaa-aata-- 372

                                                                       
Query: 714 taaaagataaggaaaaaattaaatctcatatatttaaaccttatcaaatttcacagtcta 773
           |||||| ||| |||| | | ||||||||||| ||||| ||||| |||||||| ||||| |
Sbjct: 373 taaaaggtaaagaaatagtaaaatctcatatgtttaagccttaccaaatttctcagtcaa 432

                                                                       
Query: 774 gtaaacaagaatttgtaaatcaattaaaagatcaactaagtaaacttgaggtccgctcag 833
           ||||| ||||||| |||||| |||||||||||||| ||| || |||| ||||  | || |
Sbjct: 433 gtaaaaaagaattagtaaataaattaaaagatcaattaaatagacttcaggttagttctg 492

                                             
Query: 834 aaactactcaacaagtagctcctgacacccctca 867
             |||| |||||||||||||||||| || |||||
Sbjct: 493 cgactattcaacaagtagctcctgagactcctca 526