Jatropha Genome Database

JcCA0155261.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0155261.20 + phase: 0 
         (1458 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522945|gb|FM896388.1|FM896388 FM896388 Jatropha curcas emb...   918   0.0  

>gi|268522945|gb|FM896388.1|FM896388 FM896388 Jatropha curcas embryo
            71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003602,
            mRNA sequence
          Length = 519

 Score =  918 bits (463), Expect = 0.0
 Identities = 507/514 (98%), Gaps = 7/514 (1%)
 Strand = Plus / Plus

                                                                        
Query: 733  ctgctaattatttgctctccatctaacccaact-ggatctgtttatcctaaagaattgct 791
            |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 7    ctgctaattatttg-tctccatctaacccaactgggatctgtttatcctaaagaattgct 65

                                                                        
Query: 792  tgaagagattgctcggattgtgtcaaaacatcccag--gcttctggtcctatc-tgatga 848
            ||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||
Sbjct: 66   tgaagagattgctcggattgtgtcaaaacatcccagnngcttctggtcctatcntgatga 125

                                                                        
Query: 849  aatatatgaacacataatatatgcaccggctacacatacaagttttgcatctttgccagg 908
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126  aatatatgaacacataatatatgcaccggctacacatacaagttttgcatctttgccagg 185

                                                                        
Query: 909  aatgtggggaaggactttgactgtgaatggcttttctaaggcttttgcaatgactggttg 968
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186  aatgtggggaaggactttgactgtgaatggcttttctaaggcttttgcaatgactggttg 245

                                                                        
Query: 969  gagacttggatatcttgctggccctaagcactttgttgcagcatgtaataagatccaaag 1028
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246  gagacttggatatcttgctggccctaagcactttgttgcagcatgtaataagatccaaag 305

                                                                        
Query: 1029 ccagttcacttc-agg-tgccagcagtatagctcaaaaagcagcagtggctgcattggga 1086
            |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306  ccagttcacttcnaggttgccagcagtatagctcaaaaagcagcagtggctgcattggga 365

                                                                        
Query: 1087 ctaggatatgctggtggggaagtggtatctaccatggtgaaagccttcaaggaaaggaga 1146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366  ctaggatatgctggtggggaagtggtatctaccatggtgaaagccttcaaggaaaggaga 425

                                                                        
Query: 1147 gatttcttgatcacaagttttggagaaatggaaggtgttaagatgtcaaaacctcagggt 1206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426  gatttcttgatcacaagttttggagaaatggaaggtgttaagatgtcaaaacctcagggt 485

                                              
Query: 1207 gcattttatctcttcattgatttgagctcttact 1240
            ||||||||||||||||||||||||||||||||||
Sbjct: 486  gcattttatctcttcattgatttgagctcttact 519