Jatropha Genome Database

JcCA0155001.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0155001.20 + phase: 0 
         (3342 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524184|gb|FM894863.1|FM894863 FM894863 Jatropha curcas emb...    86   3e-16

>gi|268524184|gb|FM894863.1|FM894863 FM894863 Jatropha curcas embryo
            71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000754,
            mRNA sequence
          Length = 586

 Score = 85.7 bits (43), Expect = 3e-16
 Identities = 127/155 (81%)
 Strand = Plus / Plus

                                                                        
Query: 3004 ggaacccttccatggatggcaccagaattactcgatggcagcagcaatcgagtctctgag 3063
            ||||| ||||||||||||||||||||| | ||  |||||||||| | ||  || ||||||
Sbjct: 388  ggaacacttccatggatggcaccagaacttcttaatggcagcagtagtcttgtttctgag 447

                                                                        
Query: 3064 aaggttgatgtttactcatttggtattgcaatgtgggagattttgactggtgaagagcca 3123
            ||||||||||| | |||||||||| |||   |||||||  || | ||||| |||||||||
Sbjct: 448  aaggttgatgtgttctcatttggtgttgtgctgtgggaacttctaactggagaagagcca 507

                                               
Query: 3124 tatgccaacatgcattgcggtgctatcataggcgg 3158
            |||||  || |||| | ||| ||||| ||||||||
Sbjct: 508  tatgcagacttgcactacggggctattataggcgg 542