Jatropha Genome Database

JcCA0154851.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154851.30 + phase: 0 /partial
         (336 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268526025|gb|FM891281.1|FM891281 FM891281 Jatropha curcas emb...   638   0.0  
gi|268520277|gb|FM890125.1|FM890125 FM890125 Jatropha curcas emb...   153   1e-37

>gi|268526025|gb|FM891281.1|FM891281 FM891281 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001420,
           mRNA sequence
          Length = 434

 Score =  638 bits (322), Expect = 0.0
 Identities = 336/338 (99%), Gaps = 2/338 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaggacgagaaagatgctttttacgttgtgcggaaaggagatattgttggcatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  atggaggacgagaaagatgctttttacgttgtgcggaaaggagatattgttggcatttat 151

                                                                       
Query: 61  aaaagcttaagtgattgtcaagctcaagctggatcatcagtatgtgatccttctgtaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aaaagcttaagtgattgtcaagctcaagctggatcatcagtatgtgatccttctgtaact 211

                                                                       
Query: 121 gtgttcaaggggtatggtttgcctaaggaagctgaggagcacctactctc-gcatgggct 179
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 212 gtgttcaaggggtatggtttgcctaaggaagctgaggagcacctactctcngcatgggct 271

                                                                       
Query: 180 caagaatgctacctattctatccatgctgttgatgtt-caaaaggatctttttggtaaaa 238
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 272 caagaatgctacctattctatccatgctgttgatgttccaaaaggatctttttggtaaaa 331

                                                                       
Query: 239 ttgttccctgcccttttcagcaaccgaattcttctggaggaaaagcattagattattatt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttgttccctgcccttttcagcaaccgaattcttctggaggaaaagcattagattattatt 391

                                                 
Query: 299 ctccgccacagagattgcaagatgtgcttggtttggca 336
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctccgccacagagattgcaagatgtgcttggtttggca 429


>gi|268520277|gb|FM890125.1|FM890125 FM890125 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003926,
           mRNA sequence
          Length = 525

 Score =  153 bits (77), Expect = 1e-37
 Identities = 80/81 (98%)
 Strand = Plus / Minus

                                                                       
Query: 256 cagcaaccgaattcttctggaggaaaagcattagattattattctccgccacagagattg 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 cagcaaccgaattcttctggaggaaaagcattagattattattctccgccacagagattg 162

                                
Query: 316 caagatgtgcttggtttggca 336
           |||||||||||||||| ||||
Sbjct: 161 caagatgtgcttggttcggca 141