Jatropha Genome Database

JcCA0154781.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154781.10 - phase: 0 /partial
         (1344 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523093|gb|FM894676.1|FM894676 FM894676 Jatropha curcas emb...   270   4e-72

>gi|268523093|gb|FM894676.1|FM894676 FM894676 Jatropha curcas embryo
            71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000493,
            mRNA sequence
          Length = 348

 Score =  270 bits (136), Expect = 4e-72
 Identities = 152/156 (97%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1190 atcatttagcaaaaggcggagctgatttgcattcaatggaatctggttttcctgggaaat 1249
            |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 348  atcatttagcaaaaggcggatctgatttgcattcaagggaatctggttttcctgggaaat 289

                                                                        
Query: 1250 atgc-ttatcagttttatcacatgaaaaatgcttctcagctacgaatggatgacatcccg 1308
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288  atgccttatcagttttatcacatgaaaaatgcttctcagctacgaatggatgacatcccg 229

                                                
Query: 1309 aagctcctggaagagtacaaacagctgccatctgat 1344
            ||||| ||||||||||||||||||||||||||||||
Sbjct: 228  aagcttctggaagagtacaaacagctgccatctgat 193