Jatropha Genome Database
- JcCA0154651.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0154651.30 - phase: 0
(783 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237680301|gb|GO246485.1|GO246485 JcrME_RL0029 Expressed seque... 472 e-133
gi|268517561|gb|FM889272.1|FM889272 FM889272 Jatropha curcas emb... 468 e-132
gi|268526433|gb|FM895287.1|FM895287 FM895287 Jatropha curcas emb... 383 e-106
gi|237680508|gb|GO246720.1|GO246720 JcrME_RL0264 Expressed seque... 280 2e-75
gi|268518842|gb|FM889085.1|FM889085 FM889085 Jatropha curcas emb... 224 1e-58
gi|268522291|gb|FM894436.1|FM894436 FM894436 Jatropha curcas emb... 174 1e-43
gi|268519476|gb|FM887943.1|FM887943 FM887943 Jatropha curcas emb... 109 5e-24
gi|262090680|gb|GT229038.1|GT229038 JC603 Jatropha seeds from fr... 96 7e-20
gi|268524875|gb|FM895573.1|FM895573 FM895573 Jatropha curcas emb... 96 7e-20
gi|237680980|gb|GO247616.1|GO247616 JcrME_RL1160 Expressed seque... 84 3e-16
>gi|237680301|gb|GO246485.1|GO246485 JcrME_RL0029 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 649
Score = 472 bits (238), Expect = e-133
Identities = 407/462 (88%), Gaps = 1/462 (0%)
Strand = Plus / Minus
Query: 307 agtgcctttgagccttcatccatgatggccaagtgtgacccacgccatggcaagtacatg 366
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 575 agtgcttttgagccttcatctatgatggccaagtgtgaccctcgccatggcaagtacatg 516
Query: 367 gcttgctgcctg-atgtaccgtggtgatgttgtgcccaaggatgtgaatgcagctgtggc 425
||||| ||||| |||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct: 515 gcttgttgccttcatgtaccgtggtgatgttgtgcccaaggatgtcaatgctgcagttgc 456
Query: 426 caccatcaagactaagcggactatccagtttgttgattggtgccctactggattcaagtg 485
|||||||||||| ||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct: 455 caccatcaagaccaagcgcacaattcagtttgttgattggtgcccaactggattcaagtg 396
Query: 486 tggcatcaactaccagccaccaactgttgttccaggaggtgaccttgccaaggtgcagag 545
||| ||||||||||||||||| ||||||||||| || ||||| |||||||||||||| ||
Sbjct: 395 tggtatcaactaccagccacccactgttgttcctggtggtgatcttgccaaggtgcaaag 336
Query: 546 ggctgtatgtatgatctccaattctacaagcgttgcagaagtcttctcccgtattgacca 605
||||| || ||||||||||| || || || ||||| || || ||||| || ||||||||
Sbjct: 335 agctgtttgcatgatctccaactcaaccagtgttgctgaggtgttctcacgcattgacca 276
Query: 606 caagttcgatctcatgtatgctaagcgtgcctttgtccattggtatgttggtgagggcat 665
||||| ||||| |||||||| |||||||| |||||||| |||||||| |||||||| ||
Sbjct: 275 taagtttgatctgatgtatgccaagcgtgcttttgtccactggtatgtgggtgagggtat 216
Query: 666 ggaagaaggagagttctcagaggcccgtgaggatcttgctgctctggagaaggattatga 725
||| ||||| || ||||| ||||| ||||||||||||||||| || ||||||||||||||
Sbjct: 215 ggaggaaggtgaattctctgaggctcgtgaggatcttgctgcccttgagaaggattatga 156
Query: 726 ggaggttggtgctgaatctgccgaaggagaggatggtgatga 767
|||||||| |||||||| || || || ||||| ||||||||
Sbjct: 155 agaggttggggctgaatcagctgagggcgaggaaggtgatga 114
>gi|268517561|gb|FM889272.1|FM889272 FM889272 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002889,
mRNA sequence
Length = 564
Score = 468 bits (236), Expect = e-132
Identities = 461/535 (86%), Gaps = 2/535 (0%)
Strand = Plus / Plus
Query: 142 actgcctctttgaggtttgatggtgctcttaat--gtggatgtcactgagttccagacca 199
||||||||||||||||||||||||||| | | |||||||| ||||| ||||| ||||
Sbjct: 23 actgcctctttgaggtttgatggtgctttggagtggtggatgtgactgaattccaaacca 82
Query: 200 acttggttccctatcccaggatccatttcatgctttcctcttatgcccccgtgatatcag 259
||||||| || || || || || || |||||||||||||| ||||| || || || || |
Sbjct: 83 acttggtcccatacccaagaattcacttcatgctttcctcctatgcaccagtcatttctg 142
Query: 260 ctgagaaggcatatcacgagcaactatctgttgctgagattacaaatagtgcctttgagc 319
| ||||| || || || |||||||| || |||||||| || || || ||||| |||||||
Sbjct: 143 cagagaaagcttaccatgagcaactctcagttgctgaaatcaccaacagtgcttttgagc 202
Query: 320 cttcatccatgatggccaagtgtgacccacgccatggcaagtacatggcttgctgcctga 379
||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct: 203 cttcatctatgatggccaagtgtgaccctcgccatggcaagtacatggcttgttgcctca 262
Query: 380 tgtaccgtggtgatgttgtgcccaaggatgtgaatgcagctgtggccaccatcaagacta 439
||||||||||||||||||||||||||||||| ||||| || || |||||||||||||| |
Sbjct: 263 tgtaccgtggtgatgttgtgcccaaggatgtcaatgctgcagttgccaccatcaagacca 322
Query: 440 agcggactatccagtttgttgattggtgccctactggattcaagtgtggcatcaactacc 499
|||| || || |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 323 agcgcacaattcagtttgttgattggtgcccaactggattcaagtgtggtatcaactacc 382
Query: 500 agccaccaactgttgttccaggaggtgaccttgccaaggtgcagagggctgtatgtatga 559
||||||| ||||||||||| || ||||| |||||||||||||| || ||||| || ||||
Sbjct: 383 agccacccactgttgttcctggtggtgatcttgccaaggtgcaaagagctgtttgcatga 442
Query: 560 tctccaattctacaagcgttgcagaagtcttctcccgtattgaccacaagttcgatctca 619
||||||| || || || ||||| || || ||||| || |||||||| ||||| ||||| |
Sbjct: 443 tctccaactcaaccagtgttgctgaggtgttctcacgcattgaccataagtttgatctga 502
Query: 620 tgtatgctaagcgtgcctttgtccattggtatgttggtgagggcatggaagaagg 674
||||||| |||||||| |||||||| |||||||| |||||||| ||||| |||||
Sbjct: 503 tgtatgccaagcgtgcttttgtccactggtatgtgggtgagggtatggaggaagg 557
>gi|268526433|gb|FM895287.1|FM895287 FM895287 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002087,
mRNA sequence
Length = 613
Score = 383 bits (193), Expect = e-106
Identities = 340/389 (87%)
Strand = Plus / Plus
Query: 379 atgtaccgtggtgatgttgtgcccaaggatgtgaatgcagctgtggccaccatcaagact 438
|||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||
Sbjct: 19 atgtaccgtggtgatgttgtgcccaaggatgtcaatgctgcagttgccaccatcaagacc 78
Query: 439 aagcggactatccagtttgttgattggtgccctactggattcaagtgtggcatcaactac 498
||||| || || |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 79 aagcgcacaattcagtttgttgattggtgcccaactggattcaagtgtggtatcaactac 138
Query: 499 cagccaccaactgttgttccaggaggtgaccttgccaaggtgcagagggctgtatgtatg 558
|||||||| ||||||||||| || ||||| |||||||||||||| || ||||| || |||
Sbjct: 139 cagccacccactgttgttcctggtggtgatcttgccaaggtgcaaagagctgtttgcatg 198
Query: 559 atctccaattctacaagcgttgcagaagtcttctcccgtattgaccacaagttcgatctc 618
|||||||| || || || ||||| || || ||||| || |||||||| ||||| |||||
Sbjct: 199 atctccaactcaaccagtgttgctgaggtgttctcacgcattgaccataagtttgatctg 258
Query: 619 atgtatgctaagcgtgcctttgtccattggtatgttggtgagggcatggaagaaggagag 678
|||||||| |||||||| |||||||| |||||||| |||||||| ||||| ||||| ||
Sbjct: 259 atgtatgccaagcgtgcttttgtccactggtatgtgggtgagggtatggaggaaggtgaa 318
Query: 679 ttctcagaggcccgtgaggatcttgctgctctggagaaggattatgaggaggttggtgct 738
||||| ||||| ||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 319 ttctctgaggctcgtgaggatcttgctgcccttgagaaggattatgaagaggttggggct 378
Query: 739 gaatctgccgaaggagaggatggtgatga 767
||||| || || || ||||| ||||||||
Sbjct: 379 gaatcagctgagggcgaggaaggtgatga 407
>gi|237680508|gb|GO246720.1|GO246720 JcrME_RL0264 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 700
Score = 280 bits (141), Expect = 2e-75
Identities = 271/313 (86%), Gaps = 1/313 (0%)
Strand = Plus / Minus
Query: 455 ttgttgattggtgccctactggattcaagtgtggcatcaactaccagccaccaactgttg 514
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 586 ttgttgattggtgcccaactggattcaagtgtggtatcaactaccagccacccactgttg 527
Query: 515 ttccaggaggtgaccttgccaaggtgcagagggctgtatgtatgatctccaattctacaa 574
|||| || ||||| || ||||||||||| || ||||| || ||||||||||| || || |
Sbjct: 526 ttcctggtggtgatct-gccaaggtgcaaagagctgtttgcatgatctccaactcaacca 468
Query: 575 gcgttgcagaagtcttctcccgtattgaccacaagttcgatctcatgtatgctaagcgtg 634
| ||||| || || ||||| || |||||||| ||||| ||||| |||||||| |||||||
Sbjct: 467 gtgttgctgaggtgttctcacgcattgaccataagtttgatctgatgtatgccaagcgtg 408
Query: 635 cctttgtccattggtatgttggtgagggcatggaagaaggagagttctcagaggcccgtg 694
| |||||||| |||||||| |||||||| ||||| ||||| || ||||| ||||| ||||
Sbjct: 407 cttttgtccactggtatgtgggtgagggtatggaggaaggtgaattctctgaggctcgtg 348
Query: 695 aggatcttgctgctctggagaaggattatgaggaggttggtgctgaatctgccgaaggag 754
||||||||||||| || |||||||||||||| |||||||| |||||||| || || || |
Sbjct: 347 aggatcttgctgcccttgagaaggattatgaagaggttggggctgaatcagctgagggcg 288
Query: 755 aggatggtgatga 767
|||| ||||||||
Sbjct: 287 aggaaggtgatga 275
>gi|268518842|gb|FM889085.1|FM889085 FM889085 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002652,
mRNA sequence
Length = 470
Score = 224 bits (113), Expect = 1e-58
Identities = 233/273 (85%)
Strand = Plus / Minus
Query: 495 ctaccagccaccaactgttgttccaggaggtgaccttgccaaggtgcagagggctgtatg 554
|||||||||||| ||||||||||| || ||||| ||||||||||||| || ||||| ||
Sbjct: 470 ctaccagccacccactgttgttcctggtggtgatcttgccaaggtgccaagagctgtttg 411
Query: 555 tatgatctccaattctacaagcgttgcagaagtcttctcccgtattgaccacaagttcga 614
||||||||||| || || || ||||| || || ||||| || |||||||| ||||| ||
Sbjct: 410 catgatctccaactcaaccagtgttgctgaggtgttctcacgcattgaccataagtttga 351
Query: 615 tctcatgtatgctaagcgtgcctttgtccattggtatgttggtgagggcatggaagaagg 674
||| |||||||| |||||||| |||||||| |||||||| |||||||| ||||| |||||
Sbjct: 350 tctgatgtatgccaagcgtgcttttgtccactggtatgtgggtgagggtatggaggaagg 291
Query: 675 agagttctcagaggcccgtgaggatcttgctgctctggagaaggattatgaggaggttgg 734
|| ||||| ||||| ||||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 290 tgaattctctgaggctcgtgaggatcttgctgcccttgagaaggattatgaagaggttgg 231
Query: 735 tgctgaatctgccgaaggagaggatggtgatga 767
|||||||| || || || ||||| ||||||||
Sbjct: 230 ggctgaatcagctgagggcgaggaaggtgatga 198
>gi|268522291|gb|FM894436.1|FM894436 FM894436 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004788,
mRNA sequence
Length = 638
Score = 174 bits (88), Expect = 1e-43
Identities = 328/408 (80%)
Strand = Plus / Plus
Query: 154 aggtttgatggtgctcttaatgtggatgtcactgagttccagaccaacttggttccctat 213
||||||||||| || ||||||||||| | || ||||||||||| ||| | || || |||
Sbjct: 176 aggtttgatggagccattaatgtggatattacagagttccagactaaccttgtaccatat 235
Query: 214 cccaggatccatttcatgctttcctcttatgcccccgtgatatcagctgagaaggcatat 273
|| | ||||| ||||||||||| || ||||| || || || |||||| | |||||||||
Sbjct: 236 cctcgtatccacttcatgctttcttcatatgcacctgtcatctcagctcaaaaggcatat 295
Query: 274 cacgagcaactatctgttgctgagattacaaatagtgcctttgagccttcatccatgatg 333
|| ||||| |||| || ||||||| || ||| || |||||||||||| |||||||
Sbjct: 296 catgagcagatatcaattcctgagatcacgaatgctgtttttgagccttcaaacatgatg 355
Query: 334 gccaagtgtgacccacgccatggcaagtacatggcttgctgcctgatgtaccgtggtgat 393
|| |||||||| || | ||||| || || ||||| ||||| |||||||||| || |||
Sbjct: 356 gctaagtgtgatcctagacatgggaaatatatggcctgctgtttgatgtaccgaggagat 415
Query: 394 gttgtgcccaaggatgtgaatgcagctgtggccaccatcaagactaagcggactatccag 453
||||| ||||||||||| ||||| ||||| || || || || || || |||| || ||
Sbjct: 416 gttgtccccaaggatgtcaatgctgctgttgctacaataaaaaccaaaaggaccattcaa 475
Query: 454 tttgttgattggtgccctactggattcaagtgtggcatcaactaccagccaccaactgtt 513
|||||||| ||||| || ||||| ||||| |||||||||||||| ||||| ||| |||||
Sbjct: 476 tttgttgactggtgtccaactggcttcaaatgtggcatcaactatcagcctccatctgtt 535
Query: 514 gttccaggaggtgaccttgccaaggtgcagagggctgtatgtatgatc 561
||||| || ||||| ||||||| ||| ||| | |||||||| ||||||
Sbjct: 536 gttcctgggggtgatcttgccagggtacagcgtgctgtatgcatgatc 583
>gi|268519476|gb|FM887943.1|FM887943 FM887943 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001238,
mRNA sequence
Length = 611
Score = 109 bits (55), Expect = 5e-24
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 103 aatcttaaccgccttgtatctcaggtcatctcatccctcactgcctctttgaggtttgat 162
||||||||| | ||||| |||||||| || || || | |||||||||||||||||||||
Sbjct: 427 aatcttaacaggcttgtctctcaggtgatttcctcattgactgcctctttgaggtttgat 486
Query: 163 ggtgctcttaatgtggatgtcactgagttccagaccaacttggttccctatcccaggatc 222
|||||| | ||||||||||| ||||| ||||| ||||||||||| || || || || ||
Sbjct: 487 ggtgctttgaatgtggatgtgactgaattccaaaccaacttggtcccatacccaagaatt 546
Query: 223 catttcatgctttcctcttatgc 245
|| |||||||||||||| |||||
Sbjct: 547 cacttcatgctttcctcctatgc 569
>gi|262090680|gb|GT229038.1|GT229038 JC603 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL13SE.D08.scf 5', mRNA sequence
Length = 211
Score = 95.6 bits (48), Expect = 7e-20
Identities = 90/104 (86%)
Strand = Plus / Minus
Query: 664 atggaagaaggagagttctcagaggcccgtgaggatcttgctgctctggagaaggattat 723
||||| ||||| || ||||| ||||| ||||||||||||||||| || ||||||||||||
Sbjct: 144 atggaggaaggtgaattctctgaggctcgtgaggatcttgctgcccttgagaaggattat 85
Query: 724 gaggaggttggtgctgaatctgccgaaggagaggatggtgatga 767
|| |||||||| |||||||| || || || ||||| ||||||||
Sbjct: 84 gaagaggttggggctgaatcagctgagggcgaggaaggtgatga 41
>gi|268524875|gb|FM895573.1|FM895573 FM895573 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002520,
mRNA sequence
Length = 526
Score = 95.6 bits (48), Expect = 7e-20
Identities = 90/104 (86%)
Strand = Plus / Minus
Query: 103 aatcttaaccgccttgtatctcaggtcatctcatccctcactgcctctttgaggtttgat 162
||||||||| | ||||| |||||||| || || || | |||||||||||||||||||||
Sbjct: 118 aatcttaacaggcttgtctctcaggtgatttcctcattgactgcctctttgaggtttgat 59
Query: 163 ggtgctcttaatgtggatgtcactgagttccagaccaacttggt 206
|||||| | ||||||||||| ||||| ||||| |||||||||||
Sbjct: 58 ggtgctttgaatgtggatgtgactgaattccaaaccaacttggt 15
>gi|237680980|gb|GO247616.1|GO247616 JcrME_RL1160 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 474
Score = 83.8 bits (42), Expect = 3e-16
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 686 aggcccgtgaggatcttgctgctctggagaaggattatgaggaggttggtgctgaatctg 745
|||| ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |
Sbjct: 199 aggctcgtgaggatcttgctgcccttgagaaggattatgaagaggttggggctgaatcag 140
Query: 746 ccgaaggagaggatggtgatga 767
| || || ||||| ||||||||
Sbjct: 139 ctgagggcgaggaaggtgatga 118