Jatropha Genome Database
- JcCA0154411.40
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0154411.40 - phase: 2 /pseudo/partial
(370 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|262090681|gb|GT229039.1|GT229039 JC604 Jatropha seeds from fr... 280 1e-75
gi|237680382|gb|GO246594.1|GO246594 JcrME_RL0138 Expressed seque... 258 4e-69
gi|268518587|gb|FM888830.1|FM888830 FM888830 Jatropha curcas emb... 101 5e-22
>gi|262090681|gb|GT229039.1|GT229039 JC604 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL13SE.B09.scf 5', mRNA sequence
Length = 486
Score = 280 bits (141), Expect = 1e-75
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 1 ttgttcattgtctagccacatgagtttaagctttgactgcactcagaatgattctccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ttgttcattgtctagccacatgagtttaagctttgactgcactcagaatgattctccaaa 193
Query: 61 tgtattctcaccactgtaggtcatgtacaggaaaccatcctcatctttgttttcctcgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tgtattctcaccactgtaggtcatgtacaggaaaccatcctcatctttgttttcctcgta 253
Query: 121 aatcgctgacatcatagcagc 141
|||||||||||||||||||||
Sbjct: 254 aatcgctgacatcatagcagc 274
Score = 236 bits (119), Expect = 1e-62
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 240 cagttggtggcaaaatatttttgacaaagatgaatatagccttctcagcgctgagcttta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cagttggtggcaaaatatttttgacaaagatgaatatagccttctcagcgctgagcttta 333
Query: 300 ttctctttcgaaccacataaacgaactggccgactgtcagatcagcaggaaccagatat 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttctctttcgaaccacataaacgaactggccgactgtcagatcagcaggaaccagatat 392
>gi|237680382|gb|GO246594.1|GO246594 JcrME_RL0138 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 638
Score = 258 bits (130), Expect = 4e-69
Identities = 140/142 (98%), Gaps = 1/142 (0%)
Strand = Plus / Minus
Query: 1 ttgttcattgtctagcc-acatgagtttaagctttgactgcactcagaatgattctccaa 59
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttgttcattgtctagcccacatgagtttaagctttgactgcactcagaatgattctccaa 465
Query: 60 atgtattctcaccactgtaggtcatgtacaggaaaccatcctcatctttgttttcctcgt 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 464 atgtattctcaccactgtaggtcatgtgcaggaaaccatcctcatctttgttttcctcgt 405
Query: 120 aaatcgctgacatcatagcagc 141
||||||||||||||||||||||
Sbjct: 404 aaatcgctgacatcatagcagc 383
Score = 236 bits (119), Expect = 1e-62
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 240 cagttggtggcaaaatatttttgacaaagatgaatatagccttctcagcgctgagcttta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagttggtggcaaaatatttttgacaaagatgaatatagccttctcagcgctgagcttta 324
Query: 300 ttctctttcgaaccacataaacgaactggccgactgtcagatcagcaggaaccagatat 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttctctttcgaaccacataaacgaactggccgactgtcagatcagcaggaaccagatat 265
>gi|268518587|gb|FM888830.1|FM888830 FM888830 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002327,
mRNA sequence
Length = 354
Score = 101 bits (51), Expect = 5e-22
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 55 tccaaatgtattctcaccactgtaggtcatgtacaggaaaccatcctcatctttgttttc 114
||||||||| ||||| || || |||||||| |||||||||||||||||||||||||||||
Sbjct: 126 tccaaatgtgttctcgccgctataggtcatatacaggaaaccatcctcatctttgttttc 67
Query: 115 ctcgtaaatcgctgacatcatagcagc 141
|| ||||| ||||||||||| |||||
Sbjct: 66 ttcataaattgctgacatcatggcagc 40