Jatropha Genome Database

JcCA0154411.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154411.30 + phase: 0 /partial/short
         (146 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237680382|gb|GO246594.1|GO246594 JcrME_RL0138 Expressed seque...   289   4e-79
gi|268523517|gb|FM893840.1|FM893840 FM893840 Jatropha curcas emb...    58   3e-09

>gi|237680382|gb|GO246594.1|GO246594 JcrME_RL0138 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 638

 Score =  289 bits (146), Expect = 4e-79
 Identities = 146/146 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaaagagctccttcaagttggaacatcctttggaaaggaggcaggcagaatcagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atggcaaagagctccttcaagttggaacatcctttggaaaggaggcaggcagaatcagct 178

                                                                       
Query: 61  cgaattagggagaagtatcccgatagaataccagttattgtggaaagggctgaaagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cgaattagggagaagtatcccgatagaataccagttattgtggaaagggctgaaagaagc 238

                                     
Query: 121 gacatacctgacattgacaaaaagaa 146
           ||||||||||||||||||||||||||
Sbjct: 239 gacatacctgacattgacaaaaagaa 264


>gi|268523517|gb|FM893840.1|FM893840 FM893840 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004769,
           mRNA sequence
          Length = 559

 Score = 58.0 bits (29), Expect = 3e-09
 Identities = 71/85 (83%)
 Strand = Plus / Plus

                                                                       
Query: 62  gaattagggagaagtatcccgatagaataccagttattgtggaaagggctgaaagaagcg 121
           ||||||||||||| ||||| |||||||| || || ||||| || | |||||| ||||| |
Sbjct: 122 gaattagggagaaatatccagatagaattccggtaattgttgagaaggctgagagaagtg 181

                                    
Query: 122 acatacctgacattgacaaaaagaa 146
           |||| ||| ||||||| || |||||
Sbjct: 182 acattcctaacattgataagaagaa 206