Jatropha Genome Database

JcCA0154191.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154191.10 + phase: 0 /partial
         (507 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268521717|gb|FM894313.1|FM894313 FM894313 Jatropha curcas emb...   690   0.0  

>gi|268521717|gb|FM894313.1|FM894313 FM894313 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004633,
           mRNA sequence
          Length = 579

 Score =  690 bits (348), Expect = 0.0
 Identities = 367/374 (98%), Gaps = 7/374 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   accttagtgctggagatcttcttcgagcagaaatcaaatctggatctgaaaatgggctac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 213 accttagtgctggagatcttcttcgagcagaaatcaaatctggatctgaaaatgg----- 267

                                                                       
Query: 61  agaaccatgattcaaaacatgattaaggaggggaagattgtgccctcagaggtaacaata 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 --aaccatgattcaaaacatgattaaggaggggaagattgtgccctcagaggtaacaata 325

                                                                       
Query: 121 aagcttcttcaaaaagcaatgcgggaaagtggcaatgacaaatttttgattgatggtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagcttcttcaaaaagcaatgcgggaaagtggcaatgacaaatttttgattgatggtttt 385

                                                                       
Query: 181 cctcgcaatgaggaaaaccgtgcagcatttgaatctgttaccaaaattgagccagaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cctcgcaatgaggaaaaccgtgcagcatttgaatctgttaccaaaattgagccagaattt 445

                                                                       
Query: 241 gtcttattctttgactgttctgaagaagagatggagagacgccttttaagtaggaaccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gtcttattctttgactgttctgaagaagagatggagagacgccttttaagtaggaaccag 505

                                                                       
Query: 301 ggaagagaagatgataacattgagacaataaggaagcgatttagagtttttctagagtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggaagagaagatgataacattgagacaataaggaagcgatttagagtttttctagagtct 565

                         
Query: 361 agtatcccagtggt 374
           ||||||||||||||
Sbjct: 566 agtatcccagtggt 579