Jatropha Genome Database

JcCA0153781.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0153781.10 - phase: 0 /partial
         (1203 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518574|gb|FM888761.1|FM888761 FM888761 Jatropha curcas emb...   291   9e-79
gi|268516566|gb|FM887045.1|FM887045 FM887045 Jatropha curcas emb...    58   2e-08

>gi|268518574|gb|FM888761.1|FM888761 FM888761 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002231,
            mRNA sequence
          Length = 303

 Score =  291 bits (147), Expect = 9e-79
 Identities = 147/147 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1057 ttagatgctacagagaaaattaaggatgaattcattactgatttttccgagaaagactac 1116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288  ttagatgctacagagaaaattaaggatgaattcattactgatttttccgagaaagactac 229

                                                                        
Query: 1117 aatgatataattgatggatggaaggcaaagttgatcaggagttcatctggtgagcagcga 1176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228  aatgatataattgatggatggaaggcaaagttgatcaggagttcatctggtgagcagcga 169

                                       
Query: 1177 tggggtctgttcattgcaaagaaaaat 1203
            |||||||||||||||||||||||||||
Sbjct: 168  tggggtctgttcattgcaaagaaaaat 142


>gi|268516566|gb|FM887045.1|FM887045 FM887045 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000113,
            mRNA sequence
          Length = 348

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                        
Query: 1139 aggcaaagttgatcaggagttcatctggtgagcagcgatggggtctgttcattgcaaaga 1198
            |||||||  |||||||||||||| |||| ||||||| ||||  ||||||||| |||||||
Sbjct: 11   aggcaaaactgatcaggagttcagctggagagcagctatggattctgttcatcgcaaaga 70

             
Query: 1199 a 1199
            |
Sbjct: 71   a 71