Jatropha Genome Database

JcCA0152991.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0152991.20 + phase: 2 /partial
         (463 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237680762|gb|GO246974.1|GO246974 JcrME_RL0518 Expressed seque...   771   0.0  
gi|262090735|gb|GT229093.1|GT229093 JC658 Jatropha seeds from fr...    72   6e-13

>gi|237680762|gb|GO246974.1|GO246974 JcrME_RL0518 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 650

 Score =  771 bits (389), Expect = 0.0
 Identities = 389/389 (100%)
 Strand = Plus / Minus

                                                                       
Query: 75  aagacgaaagagcaaagcaacacagcatacccgacgatttttggagttccagtgcaggtg 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aagacgaaagagcaaagcaacacagcatacccgacgatttttggagttccagtgcaggtg 584

                                                                       
Query: 135 acatggactatagtggagtacaatcccaaagaagtgcttcatcaatcagcgccttgaatc 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 acatggactatagtggagtacaatcccaaagaagtgcttcatcaatcagcgccttgaatc 524

                                                                       
Query: 195 agccctttgatccctctgctaatgctggcagcacaagcaatccttctgaatttgtaaact 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agccctttgatccctctgctaatgctggcagcacaagcaatccttctgaatttgtaaact 464

                                                                       
Query: 255 atggtcttcttctctggaagcaaacaaggcagcagtggcttgcaaataaaaggtctccaa 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atggtcttcttctctggaagcaaacaaggcagcagtggcttgcaaataaaaggtctccaa 404

                                                                       
Query: 315 acaagaaacaagttcgagaacccactataaggtggaatgccacttatgagaacttactag 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acaagaaacaagttcgagaacccactataaggtggaatgccacttatgagaacttactag 344

                                                                       
Query: 375 ggtcaaacaagcctttccccagacctatccctcttgctgaaatggtggattttctggttg 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggtcaaacaagcctttccccagacctatccctcttgctgaaatggtggattttctggttg 284

                                        
Query: 435 atgtttgggaacaggagggtttgtatgac 463
           |||||||||||||||||||||||||||||
Sbjct: 283 atgtttgggaacaggagggtttgtatgac 255


>gi|262090735|gb|GT229093.1|GT229093 JC658 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL15SE.B01.scf 5', mRNA sequence
          Length = 538

 Score = 71.9 bits (36), Expect = 6e-13
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                       
Query: 239 tctgaatttgtaaactatggtcttcttctctggaagcaaacaag 282
           ||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 175 tctgaatttgtaaaccatggtcttcttctctggaatcaaacaag 218