Jatropha Genome Database

JcCA0152881.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0152881.30 - phase: 2 /pseudo/partial
         (889 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268526404|gb|FM895258.1|FM895258 FM895258 Jatropha curcas emb...   735   0.0  

>gi|268526404|gb|FM895258.1|FM895258 FM895258 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002055,
           mRNA sequence
          Length = 471

 Score =  735 bits (371), Expect = 0.0
 Identities = 371/371 (100%)
 Strand = Plus / Minus

                                                                       
Query: 519 ctgagtaccgaaataatcaccatgtaaattcatcaggcgatgtttatagctttggaatag 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ctgagtaccgaaataatcaccatgtaaattcatcaggcgatgtttatagctttggaatag 412

                                                                       
Query: 579 tacttctgcagattctatcaggaaagagggttattaatatgaatctgaagaatccaatgc 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tacttctgcagattctatcaggaaagagggttattaatatgaatctgaagaatccaatgc 352

                                                                       
Query: 639 cattggataaaatggcaaaatccataaccagaggaggcagcataatagaatttgcagatc 698
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cattggataaaatggcaaaatccataaccagaggaggcagcataatagaatttgcagatc 292

                                                                       
Query: 699 ctaagctgaatggagaatattcagcagaagcttttgttctagtatttcagctagcattgt 758
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ctaagctgaatggagaatattcagcagaagcttttgttctagtatttcagctagcattgt 232

                                                                       
Query: 759 catgcacagcacttaagcaacaaagaccaacaatggagcaagttgttgtaaaattacaac 818
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 catgcacagcacttaagcaacaaagaccaacaatggagcaagttgttgtaaaattacaac 172

                                                                       
Query: 819 aagcccttgatgtatcaacaagggcaaaagcctctactcctgaaacttcacctgaccggc 878
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 aagcccttgatgtatcaacaagggcaaaagcctctactcctgaaacttcacctgaccggc 112

                      
Query: 879 tttcactttgt 889
           |||||||||||
Sbjct: 111 tttcactttgt 101