Jatropha Genome Database

JcCA0152881.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0152881.20 + phase: 0 /pseudo
         (1530 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520936|gb|FM891655.1|FM891655 FM891655 Jatropha curcas emb...   100   9e-21

>gi|268520936|gb|FM891655.1|FM891655 FM891655 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002006,
           mRNA sequence
          Length = 575

 Score = 99.6 bits (50), Expect = 9e-21
 Identities = 364/470 (77%), Gaps = 14/470 (2%)
 Strand = Plus / Plus

                                                                       
Query: 504 ttgcacgaacctattggtgttgcaggacaaattattccgtggaattttccttttctcatg 563
           ||||| ||||||||||| |||||||| ||||||||||| |||||||||||| || || ||
Sbjct: 87  ttgcatgaacctattggagttgcagggcaaattattccatggaattttcctcttatcttg 146

                                                                       
Query: 564 tatgcttggaagatttgccctgcattagcatgtgctaatggagtttttctaaagactgca 623
           | |||||||||  || | ||||||||||| |||| ||||    || | || || ||  ||
Sbjct: 147 tttgcttggaaagttggtcctgcattagcttgtggtaatactattgtactgaaaacatca 206

                                                                       
Query: 624 gagcaaacaccactttctgctctttatgtgacaaaattattgcatgaagctggc-ttcct 682
           || || ||||| ||| ||||||| ||||    |||  | || ||||| |||||| |||||
Sbjct: 207 gaacagacacctcttactgctctctatgcaggaaagctcttccatgatgctggccttcct 266

                                                                       
Query: 683 cctggtgttctaaatgtggtttctggctttggtcctactgctggtgcatctctttgtagt 742
           || |||||||| ||||| ||||| |||| |||||| ||||||||| || |||||   |||
Sbjct: 267 ccaggtgttctgaatgtagtttcaggctatggtccaactgctggttcagctcttgccagt 326

                                                                       
Query: 743 catatgggtgttgacaag-------------gatcaactgagactggtaagaaaatactt 789
           || |||| ||| ||||||             ||||||||||||| || |||   || || 
Sbjct: 327 cacatggatgtagacaagatttctttcacaggatcaactgagacaggcaaggttatcctc 386

                                                                       
Query: 790 gaaatggcggcaatgagcaacctcaagtcagtgactttagagcttggaggaaaatctcct 849
           ||| |||| || |  || || || ||| |||| || ||||| |||||||| ||||| |||
Sbjct: 387 gaattggctgctaaaagtaatcttaagccagttacattagaacttggagggaaatcacct 446

                                                                       
Query: 850 tttattatatgtgaggatgctgatatcgatcaggctgtggagcttgcagattttgcattg 909
           || ||  |||| || ||||||||||| ||  ||||||||||||||||| | ||||| |  
Sbjct: 447 ttcatagtatgcgaagatgctgatattgacaaggctgtggagcttgcacactttgcctga 506

                                                             
Query: 910 ttctttaaccagggtcaatgatgttgtgctgggtctcgtacatttgtaca 959
           |||||||| ||||| ||||| ||| |||||||||||||||| | ||||||
Sbjct: 507 ttctttaatcagggccaatgttgtagtgctgggtctcgtacgtatgtaca 556