Jatropha Genome Database

JcCA0152411.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0152411.20 + phase: 0 
         (630 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237679841|gb|GO247146.1|GO247146 JcrME_RL0690 Expressed seque...   793   0.0  

>gi|237679841|gb|GO247146.1|GO247146 JcrME_RL0690 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 620

 Score =  793 bits (400), Expect = 0.0
 Identities = 428/432 (99%), Gaps = 4/432 (0%)
 Strand = Plus / Minus

                                                                       
Query: 199 ctacctagacatcagtttggtaatttgcaaagcaagatgtttcctgcatatttttggttg 258
           ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 573 ctacctagacatcagtt-ggtaatt-gcaaagcaagatgtttcctgcatatttt-ggttg 517

                                                                       
Query: 259 gtgggtgtgtgttgtgcaacatcagtgggatcatttggttacctgcacccatggaaatct 318
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtgggtgtgtgt-gtgcaacatcagtgggatcatttggttacctgcacccatggaaatct 458

                                                                       
Query: 319 gcatccactgcagagaagtaccagctgggctttttgctttcctccttggctttcaacctt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gcatccactgcagagaagtaccagctgggctttttgctttcctccttggctttcaacctt 398

                                                                       
Query: 379 gccaacttgtttgtctttacacccatgactattgagatgatgagacaaaggcacaaggtg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gccaacttgtttgtctttacacccatgactattgagatgatgagacaaaggcacaaggtg 338

                                                                       
Query: 439 gagcgagaggagaacatcgggactgaagttgggtggtcaaagaaccaggaagctgcaaag 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gagcgagaggagaacatcgggactgaagttgggtggtcaaagaaccaggaagctgcaaag 278

                                                                       
Query: 499 actaatccaaagcttgctgccatgaacaagaaatttggcatgatccatggtttttcatct 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 actaatccaaagcttgctgccatgaacaagaaatttggcatgatccatggtttttcatct 218

                                                                       
Query: 559 cttgctaatattatgtcttttggtggtcttgccatgcactcgtggtacttagcaggtaag 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 cttgctaatattatgtcttttggtggtcttgccatgcactcgtggtacttagcaggtaag 158

                       
Query: 619 ctaaatctgtaa 630
           ||||||||||||
Sbjct: 157 ctaaatctgtaa 146