Jatropha Genome Database

JcCA0150921.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0150921.10 + phase: 0 
         (780 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522892|gb|FM896335.1|FM896335 FM896335 Jatropha curcas emb...   432   e-121
gi|268519592|gb|FM888059.1|FM888059 FM888059 Jatropha curcas emb...   204   1e-52

>gi|268522892|gb|FM896335.1|FM896335 FM896335 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003537,
           mRNA sequence
          Length = 537

 Score =  432 bits (218), Expect = e-121
 Identities = 234/238 (98%), Gaps = 1/238 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgactgctaccatgaccaatggtgagattcacacagtcagtactaatggaggcataaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgactgctaccatgaccaatggtgagattcacacagtcagtactaatggaggcataaca 360

                                                                       
Query: 61  attgaaaaacctttcaagatctttgtgggttatgatccacgcgaagatattgcttatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attgaaaaacctttcaagatctttgtgggttatgatccacgcgaagatattgcttatgag 420

                                                                       
Query: 121 gtttgtcaccattccataatgaagcgatcttcaattcctgttgagatctgccccattata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 421 gtttgtcaccattccataatgaagcgatcttcaattcctgttgagatctgccccattatt 480

                                                                     
Query: 181 caatcagaacttagaaagaaaaatctttattggcgtgagagaggcaaactcgagagca 238
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 481 acatcagaacttagaaagaaaaatctttattggcgtgagagaggc-aactcgagagca 537


>gi|268519592|gb|FM888059.1|FM888059 FM888059 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001377,
           mRNA sequence
          Length = 279

 Score =  204 bits (103), Expect = 1e-52
 Identities = 103/103 (100%)
 Strand = Plus / Minus

                                                                       
Query: 678 agggccgtggtttgatgcatggaaaaattgtgagtttgcagacttatggttaaaggagat 737
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agggccgtggtttgatgcatggaaaaattgtgagtttgcagacttatggttaaaggagat 220

                                                      
Query: 738 ggaagagtacaacaatgagaagaagaagtttgctcaagattag 780
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ggaagagtacaacaatgagaagaagaagtttgctcaagattag 177