Jatropha Genome Database
- JcCA0146411.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0146411.20 - phase: 0
(1857 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268526396|gb|FM895250.1|FM895250 FM895250 Jatropha curcas emb... 930 0.0
gi|268517227|gb|FM893575.1|FM893575 FM893575 Jatropha curcas emb... 856 0.0
gi|268521570|gb|FM896778.1|FM896778 FM896778 Jatropha curcas emb... 722 0.0
gi|268521471|gb|FM894223.1|FM894223 FM894223 Jatropha curcas emb... 646 0.0
gi|268519034|gb|FM887501.1|FM887501 FM887501 Jatropha curcas emb... 591 e-168
gi|268519111|gb|FM887578.1|FM887578 FM887578 Jatropha curcas emb... 331 2e-90
gi|218687032|gb|GH296416.1|GH296416 JCL866 Jatropha curcas total... 208 2e-53
gi|218687637|gb|GH296230.1|GH296230 JCL679 Jatropha curcas total... 208 2e-53
gi|218687854|gb|GH295836.1|GH295836 JCL285 Jatropha curcas total... 208 2e-53
gi|268517252|gb|FM893600.1|FM893600 FM893600 Jatropha curcas emb... 182 1e-45
gi|268518357|gb|FM888631.1|FM888631 FM888631 Jatropha curcas emb... 139 1e-32
gi|262090640|gb|GT228998.1|GT228998 JC563 Jatropha seeds from fr... 62 2e-09
>gi|268526396|gb|FM895250.1|FM895250 FM895250 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002045,
mRNA sequence
Length = 511
Score = 930 bits (469), Expect = 0.0
Identities = 505/514 (98%), Gaps = 6/514 (1%)
Strand = Plus / Plus
Query: 333 ctttgtttatgggattattcct-gagaaaggaaagccagtgactggggcatcagataatc 391
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtttatgggatt---cctngagaaaggaaagccagtgactggggcatcagataatc 57
Query: 392 ttcgagagtggtggaaggataaagtaaggtttgatcgaaatggtccggctgccattgcca 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 ttcgagagtggtggaaggataaagtaaggtttgatcgaaatggtccggctgccattgcca 117
Query: 452 agtatcaagcggataattcgatcccaggcaagaatgaggattgtaattcaattggtccaa 511
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 118 agtatcaagcggataattcgatcccaggcaagaatgagggttgtaattcaattggtccaa 177
Query: 512 ctccacataccttgcaggagcttcaagatactactttgggttcgcttttgtcagctttga 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ctccacataccttgcaggagcttcaagatactactttgggttcgcttttgtcagctttga 237
Query: 572 tgcagcactgtgatcctcctcagaggcggtttccattggagaaaggtgttcctccaccat 631
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 238 tgcagcactgtgatcctcctcagaggcggtttccattggagaaaggtattcctccaccat 297
Query: 632 ggtggcccaatggaaatgaagagtggtggcctcaattaggcttacctaaggaccagggtc 691
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 298 ggtggcccaatggaaatgaagagtggtggcctcaattaggcttacctaaggaacagggtc 357
Query: 692 ctccaccttataagaagcctcatgacttgaaaaaggcatggaaggttggggttcttactg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctccaccttataagaagcctcatgacttgaaaaaggcatggaaggttggggttcttactg 417
Query: 752 cagtgatcaaacatatgtctccagacattgccaaaattcgcaagcttgtgagacagtcaa 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cagtgatcaaacatatgtctccagacattgccaaaattcgcaagcttgtgagacagtcaa 477
Query: 812 agtgtttacaggacaaaa--tgacagctaaggag 843
|||||||||||||||||| ||||||||||||||
Sbjct: 478 agtgtttacaggacaaaaattgacagctaaggag 511
>gi|268517227|gb|FM893575.1|FM893575 FM893575 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004445,
mRNA sequence
Length = 440
Score = 856 bits (432), Expect = 0.0
Identities = 435/436 (99%)
Strand = Plus / Plus
Query: 1162 gacatgatggtggatcagaagatatatacatgtgagtttgttcaatgtccttacagtcaa 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gacatgatggtggatcagaagatatatacatgtgagtttgttcaatgtccttacagtcaa 64
Query: 1222 ctccgtcttggttttaatgatagggcttctagggacaatcatcaattaaattgcccatat 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ctccgtcttggttttaatgatagggcttctagggacaatcatcaattaaattgcccatat 124
Query: 1282 agatgctctctggactttggaggatcaaattttcactgtaatgaagtgaagcctgttatc 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 agatgctctctggactttggaggatcaaattttcactgtaatgaagtgaagcctgttatc 184
Query: 1342 tttcctcatccaaagccagctcctctaatggtgaatgcagctccacctactttcgatcta 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tttcctcatccaaagccagctcctctaatggtgaatgcagctccacctactttcgatcta 244
Query: 1402 tcaggagttccggaagatgggcaaaagatgatcagtgaactcatgtcaatctatgacact 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tcaggagttccggaagatgggcaaaagatgatcagtgaactcatgtcaatctatgacact 304
Query: 1462 aacatccaaggaaacaagaatacaaatgctggcaacaatggggtcaatgtcaatgaaagt 1521
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 305 aacatccaaggaaacaagaatacaaatgctggccacaatggggtcaatgtcaatgaaagt 364
Query: 1522 cacagtcttttccagccaaaaattcaccatcatcatcaaccggacaactacttccgaggt 1581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cacagtcttttccagccaaaaattcaccatcatcatcaaccggacaactacttccgaggt 424
Query: 1582 caagcgaatgtgatag 1597
||||||||||||||||
Sbjct: 425 caagcgaatgtgatag 440
>gi|268521570|gb|FM896778.1|FM896778 FM896778 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004074,
mRNA sequence
Length = 631
Score = 722 bits (364), Expect = 0.0
Identities = 364/364 (100%)
Strand = Plus / Plus
Query: 1494 caacaatggggtcaatgtcaatgaaagtcacagtcttttccagccaaaaattcaccatca 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 caacaatggggtcaatgtcaatgaaagtcacagtcttttccagccaaaaattcaccatca 64
Query: 1554 tcatcaaccggacaactacttccgaggtcaagcgaatgtgatagagggaaatatttttga 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tcatcaaccggacaactacttccgaggtcaagcgaatgtgatagagggaaatatttttga 124
Query: 1614 agaatccaatattcataataaccatcaaatgttttctcaggatagtaatcaatttgaaag 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 agaatccaatattcataataaccatcaaatgttttctcaggatagtaatcaatttgaaag 184
Query: 1674 gtttaaagctttgaattctccatttgagagcaaccaccaccccaccgccgccgccaccaa 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtttaaagctttgaattctccatttgagagcaaccaccaccccaccgccgccgccaccaa 244
Query: 1734 caacagcagctttaagttcggatctccattcgatttagcttcctttgactacaaagaaga 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 caacagcagctttaagttcggatctccattcgatttagcttcctttgactacaaagaaga 304
Query: 1794 cttgcaaggcttggtaatggatgctctgccaaaacagcaggatgtttcaatctggttcca 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cttgcaaggcttggtaatggatgctctgccaaaacagcaggatgtttcaatctggttcca 364
Query: 1854 gtga 1857
||||
Sbjct: 365 gtga 368
>gi|268521471|gb|FM894223.1|FM894223 FM894223 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004524,
mRNA sequence
Length = 401
Score = 646 bits (326), Expect = 0.0
Identities = 382/398 (95%), Gaps = 2/398 (0%)
Strand = Plus / Plus
Query: 736 gttggggttcttactg-cagtgatcaaacatatgtctccagacattgccaaaattcgcaa 794
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4 gttggggttcttactggcagtgatcaaacatatgtctccagacattgcccaaattcgcaa 63
Query: 795 gcttgtgagacagtcaaagtgtttacaggacaaaatgacagctaaggagagtgcaacttg 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gcttgtgagacagtcaaagtgtttacaggacaaaatgacagctaaggagagtgcaacttg 123
Query: 855 gcttgcaattattaaccaagaggaggcattggcccgagagctttaccctgattcatgccc 914
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gcttgcaattattaacccagaggaggcattggcccgagagctttaccctgattcatgccc 183
Query: 915 acccttgtcatcgac-tggagggagtggttcattagtgattcatgattgcagtgaatatg 973
|||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 184 ccccttgtcatcgacatggagggagtggttccttagtgattcatgattgcggtgaatatg 243
Query: 974 atgttgaaggggttgaaaatgagccgaactttgatgtgcaagagtgcaaacctgagaatc 1033
|||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 244 atgttgaaggggttcaaaatgagccgaactttgatgtgcacgagtgcacacctgagaatc 303
Query: 1034 tgaattccaatttgggaatggagagaatgagggaaaggcttccacttcgacaaccttctt 1093
||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct: 304 tgaattccactttgggaatggagagaatgaaggaaaggcttccacttctacaaccctctt 363
Query: 1094 atccgattaagggagagattgtcactaatgttgatttt 1131
|||||||||| |||||||||||||||| ||||||||||
Sbjct: 364 atccgattaatggagagattgtcactactgttgatttt 401
>gi|268519034|gb|FM887501.1|FM887501 FM887501 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000717,
mRNA sequence
Length = 521
Score = 591 bits (298), Expect = e-168
Identities = 347/362 (95%), Gaps = 1/362 (0%)
Strand = Plus / Plus
Query: 1 atgatgttcgatgagatgggattttgtagtgatatggatttcttctctgcgccttttgga 60
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 160 atgatgttcgatgagatgggatttcttggtgatatggatttcttctctgcgccttttgga 219
Query: 61 gaagatgtggctgctccgcaagctgagccggagcctactgtggaggatgattatagtgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gaagatgtggctgctccgcaagctgagccggagcctactgtggaggatgattatagtgat 279
Query: 121 gaggagactgatgttgatgagcttgagcgcaggatgtggagggacaagatgcgtcttaaa 180
||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gaggagatttatattgatgagcttgagcgcaggatgtggagggacaagatgcgtcttaaa 339
Query: 181 aggctgaaagagcagaacaagagtaaagaaggtattgatattgctaagcagaggcagtca 240
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 340 tggctgaaagagcagatcaagagtaaagaaggtattgatattgctaagcagaggccgtca 399
Query: 241 caggaacaagctaggaggaagaagatgtcaagggctcaagatgggatcttaaaatatatg 300
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 400 caggaacaagctaggaggaagaagatgtccagggctcaagatgggatcttccaatatatg 459
Query: 301 ttgaagatgatgga-agtttgtaaagctcaaggctttgtttatgggattattcctgagaa 359
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 460 ttgaagatgatggaccgtttgtaaagctcacggctttgtttatgggattattcctgagaa 519
Query: 360 ag 361
||
Sbjct: 520 ag 521
>gi|268519111|gb|FM887578.1|FM887578 FM887578 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000809,
mRNA sequence
Length = 492
Score = 331 bits (167), Expect = 2e-90
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 1691 ctccatttgagagcaaccaccaccccaccgccgccgccaccaacaacagcagctttaagt 1750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccatttgagagcaaccaccaccccaccgccgccgccaccaacaacagcagctttaagt 60
Query: 1751 tcggatctccattcgatttagcttcctttgactacaaagaagacttgcaaggcttggtaa 1810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcggatctccattcgatttagcttcctttgactacaaagaagacttgcaaggcttggtaa 120
Query: 1811 tggatgctctgccaaaacagcaggatgtttcaatctggttccagtga 1857
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggatgctctgccaaaacagcaggatgtttcaatctggttccagtga 167
>gi|218687032|gb|GH296416.1|GH296416 JCL866 Jatropha curcas total leaf
library Jatropha curcas cDNA, mRNA sequence
Length = 524
Score = 208 bits (105), Expect = 2e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1753 ggatctccattcgatttagcttcctttgactacaaagaagacttgcaaggcttggtaatg 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatctccattcgatttagcttcctttgactacaaagaagacttgcaaggcttggtaatg 60
Query: 1813 gatgctctgccaaaacagcaggatgtttcaatctggttccagtga 1857
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatgctctgccaaaacagcaggatgtttcaatctggttccagtga 105
>gi|218687637|gb|GH296230.1|GH296230 JCL679 Jatropha curcas total leaf
library Jatropha curcas cDNA, mRNA sequence
Length = 524
Score = 208 bits (105), Expect = 2e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1753 ggatctccattcgatttagcttcctttgactacaaagaagacttgcaaggcttggtaatg 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatctccattcgatttagcttcctttgactacaaagaagacttgcaaggcttggtaatg 60
Query: 1813 gatgctctgccaaaacagcaggatgtttcaatctggttccagtga 1857
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatgctctgccaaaacagcaggatgtttcaatctggttccagtga 105
>gi|218687854|gb|GH295836.1|GH295836 JCL285 Jatropha curcas total leaf
library Jatropha curcas cDNA, mRNA sequence
Length = 524
Score = 208 bits (105), Expect = 2e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1753 ggatctccattcgatttagcttcctttgactacaaagaagacttgcaaggcttggtaatg 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatctccattcgatttagcttcctttgactacaaagaagacttgcaaggcttggtaatg 60
Query: 1813 gatgctctgccaaaacagcaggatgtttcaatctggttccagtga 1857
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatgctctgccaaaacagcaggatgtttcaatctggttccagtga 105
>gi|268517252|gb|FM893600.1|FM893600 FM893600 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004479,
mRNA sequence
Length = 167
Score = 182 bits (92), Expect = 1e-45
Identities = 153/164 (93%), Gaps = 7/164 (4%)
Strand = Plus / Plus
Query: 1681 gctttgaattctccatttgagagcaaccaccaccccac-cgcc-gccgcc-accaacaa- 1736
||||||||| |||||||||| ||||||||||||||||| |||| |||||| |||| |||
Sbjct: 5 gctttgaat-ctccatttgaaagcaaccaccaccccacacgccagccgcccaccaccaaa 63
Query: 1737 cagca-gctttaagttcggatctccattcgatttagcttcctttgactacaaagaagact 1795
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 64 cagcaagctttaagttcggatctccattcgatttagcttcctttgactacacagaagact 123
Query: 1796 tgcaaggcttggtaatggatgctctg-ccaaaacagcaggatgt 1838
|||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 124 tgcaaggcttggtaatggatgctctgaccataacagcaggatgt 167
>gi|268518357|gb|FM888631.1|FM888631 FM888631 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002076,
mRNA sequence
Length = 384
Score = 139 bits (70), Expect = 1e-32
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 1788 agaagacttgcaaggcttggtaatggatgctctgccaaaacagcaggatgtttcaatctg 1847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agaagacttgcaaggcttggtaatggatgctctgccaaaacagcaggatgtttcaatctg 310
Query: 1848 gttccagtga 1857
||||||||||
Sbjct: 309 gttccagtga 300
>gi|262090640|gb|GT228998.1|GT228998 JC563 Jatropha seeds from fruits
at three stages of maturation Jatropha curcas cDNA clone
PL12SE.H01.scf 5', mRNA sequence
Length = 330
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1827 acagcaggatgtttcaatctggttccagtga 1857
|||||||||||||||||||||||||||||||
Sbjct: 330 acagcaggatgtttcaatctggttccagtga 300