Jatropha Genome Database

JcCA0146311.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0146311.30 - phase: 0 
         (1395 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520589|gb|FM889347.1|FM889347 FM889347 Jatropha curcas emb...   101   2e-21

>gi|268520589|gb|FM889347.1|FM889347 FM889347 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002991,
           mRNA sequence
          Length = 535

 Score =  101 bits (51), Expect = 2e-21
 Identities = 222/279 (79%)
 Strand = Plus / Plus

                                                                       
Query: 418 gttatcagctgtggttatgaagataaaacggaatggggaaaggaagttggctggatatat 477
           |||||||||||||| ||||| || ||||| || |||||||  ||  |||| ||||| |||
Sbjct: 83  gttatcagctgtgggtatgaggacaaaacagattggggaagcgagattggatggatctat 142

                                                                       
Query: 478 ggctctgtgactgaggatatcctgacaggattcaagatgcactgccatggatggcgatct 537
           || ||||| || || ||||| || || ||||| ||||||||   || ||| ||||| || 
Sbjct: 143 ggttctgttacagaagatattcttactggatttaagatgcatgcccgtggttggcggtca 202

                                                                       
Query: 538 gtgtactgcatacctaagcggcctgcgtttaaggggtcagctcctattaatctgtcagat 597
            | |||||||| || ||||| || || ||||| ||||| ||||| |||||||| ||||||
Sbjct: 203 atttactgcatgcccaagcgtccagcttttaaagggtctgctcccattaatctttcagat 262

                                                                       
Query: 598 cgtctacaccaagttcttcgatgggcccttgggtctgtggaaattttcttgagcagacat 657
           ||| |  ||||||| |||||||||||  | || || ||||||||| | || ||  | |||
Sbjct: 263 cgtttgaaccaagtgcttcgatgggctttgggttcagtggaaattcttttcagtcggcat 322

                                                  
Query: 658 tgtcctatttggtatggctatgggggtggattgaaatgg 696
           ||||| ||||||||||| ||||| ||| || ||||||||
Sbjct: 323 tgtccaatttggtatggttatggtggtagactgaaatgg 361